Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06555 ATGCATTTCGCAAATCTGGATGACACTCCCATGTTCCGCCAACAGCTCCAGTGCTTGGAGGAAAGCGCAGAATCATTGCGCACCAGATGCTTGAAGTTCTACAAAGGATCTCGAAAGGAAGGGCTTGGAGAGGCATATGATGGGGATATCGCATTTGCAAGTGCCCTTGAAAATTTTGGAGGAGGGAATGCTGATCCTCATTTTGTTGCTTTGGGAGGACCTGTTATGACCAAATTTACTATTGCTTTGAGAGAAATTAGTACATACAAGGAACTTCTTCGGTCACAGGTAGAGCACATGTTCAATGACCGGTTACTACAAATTGTCAATGTTGACATCAATGAAGTCAAGGAAGCTCGTAAGCATTTTGACAAAGCTTCCCTTGTATATGACCAGGCTCGTGAAAAGTTTATGTCACTGAGAAAAAGCACTAAGATTGATATTGCCACTGTCATAGAAGAGGAAATGCAAAATGCAAGAACGTTGTTTGAGGAAGCCCGTTTCAATCTGGTTGGTGCTCTTAATAACATTGAGGTCAAGAAGAGATTTGAGTTTTTAGAGGTTGTCACTGGAATTATGGATGCTCATCTTCGATACTTTCAACAGGGTTATCAGCTATTACATCAGATGGAACCTTTCATTAACGAGGAGGTAATATTTGACTCAGCTATGTTGCAGGTTTTGGATTATGTACAACAGTCAAGAGAAAGTTACAATAAGGAGCAGATTTCACTTTATAAAAGAATGCAAGACTACAAAAGACAAGTTTATGAAGAAAGTAGGTTGTCCTTGAATGGCCCTTATGGATCTCCTACTGGAGACTGCGTGCATCCTTTTCCTAAGATATCAAATGAAGTGGCAGATGTAGTAATGGAGTCTGTTGCAAATGGAAAGGTTCAAATCATTCGACAAGGATATCTTTCAAAACGATCCTCCAATTTGAGAGGTGACTGGAAAAGAAGGTATTTTGTTCTTGATAGTCGAGGAATGTTGTACTACTACCGCAAACCATGGAACCTGTCATATGGCAGCAATCAACTATCTCCAAGGAGGAATAGTGCCACTGAAAATGGTTCTGGGCTTCTGAGTCGATGGCTTTCTTCTCACTACCATGGAGGTGTCCACGATGAAAGATCTGTAGCACGTCATACAGTGAACCTGCTCACGTCAACAATCAAGGCTGATGCTGATGATCAGTCAGATTTAAGATTCTGCTTCAGGATTATTTCGCCATCCAAGAACTATACATTGCAGGCAGAAAATGCGGTGGACCAGATGGATTGGATGGAAAAGATAAATGGAGTAATTGCCTCCTTATTGAGTGCCCAGACACTGGGAACGCCTACCTCAGCTGACTCAGAAAACGGTGACTCTTGCTCTGCCGGTAAGGGTAATATGTTAGAAAATTCTCCAGATGATGATCGCACTGTGACCGAGAAATCTGCATCCAAGAGTTCCACCCCTAATAATCACTTACGTTCATCTAGAAGTTTGCACTTGCATAAATACAGTATAAGAAGTGAAAAGCCAATTGATATTCTTAGAAGGGTGAGCGGAAATGACAGATGTGCTGATTGTGGAAAACCTGAACCAGACTGGGCATCCTTAAACCTCGGCATCCTTATATGCATTGAATGTTCTGGTGTTCATCGTAATCTTGGTGTACATATATCAAAAGTAAGATCACTGACACTTGATGTGAAAGTCTGGGATCCTTCTGTCTTAAGTATGTTTAAGTCACTTGGCAACCTTTTTGCAAACTCAGTTTGGGAGGAGCTGTTATATTCAACTAGTACTTTGCAAACTGATGACACCCCTGTTGGTTCATCCAAGGCAAACAGAGACAAGCTATCTCATGCAAGAAAACCGAAACATGATGATTCTATTTCATTAAAGGAGAAGTTCATTCACGCAAAGTATTCTGAGAAATTATTCATTGGCCGGACGAAGAAAGACCACCCGCTCCTTTCACTGGCAAAAAAGGTATTGGAAAGCATCTGTGCCAATGACAAGAAAGCAGTGTACGAGCATATTATCAAGTCAGATGCGGATGTCAATGCCATCAGTGGGAAAGCATTATCTGGTGAGTCTTTCAACATGGCTTCTTCAAGTAGTTTAAAGTTAAACCTTTCATCGCAAACTGAAAATCAGCTGATTGAGGACATACGAGATGGTTCTAGTGTGCTTCACCTGGCATGCCTAACTAGTGACATTGGCATGGTGGAGCTGCTCCTACAGCACGGGGCAGATATAAATGCTTGTGATTCAAGAGGTCAGACACCGCTACATTGCTGCATTATCAGAGGGAAGACCGCAGCTGCAAAAGCGCTTATTATGAGGGGGGCCAATCCACATCTGGCAGATAAAGAAGGCAACACTCCTCTTAAACTTGCAGCAGAATCCGGCTCTGTTGACAAAGAAATTCTTGCTCTCATGGCTAGCAGATAA 2448 0.4212 MHFANLDDTPMFRQQLQCLEESAESLRTRCLKFYKGSRKEGLGEAYDGDIAFASALENFGGGNADPHFVALGGPVMTKFTIALREISTYKELLRSQVEHMFNDRLLQIVNVDINEVKEARKHFDKASLVYDQAREKFMSLRKSTKIDIATVIEEEMQNARTLFEEARFNLVGALNNIEVKKRFEFLEVVTGIMDAHLRYFQQGYQLLHQMEPFINEEVIFDSAMLQVLDYVQQSRESYNKEQISLYKRMQDYKRQVYEESRLSLNGPYGSPTGDCVHPFPKISNEVADVVMESVANGKVQIIRQGYLSKRSSNLRGDWKRRYFVLDSRGMLYYYRKPWNLSYGSNQLSPRRNSATENGSGLLSRWLSSHYHGGVHDERSVARHTVNLLTSTIKADADDQSDLRFCFRIISPSKNYTLQAENAVDQMDWMEKINGVIASLLSAQTLGTPTSADSENGDSCSAGKGNMLENSPDDDRTVTEKSASKSSTPNNHLRSSRSLHLHKYSIRSEKPIDILRRVSGNDRCADCGKPEPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDPSVLSMFKSLGNLFANSVWEELLYSTSTLQTDDTPVGSSKANRDKLSHARKPKHDDSISLKEKFIHAKYSEKLFIGRTKKDHPLLSLAKKVLESICANDKKAVYEHIIKSDADVNAISGKALSGESFNMASSSSLKLNLSSQTENQLIEDIRDGSSVLHLACLTSDIGMVELLLQHGADINACDSRGQTPLHCCIIRGKTAAAKALIMRGANPHLADKEGNTPLKLAAESGSVDKEILALMASR. 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06555 815 ProSiteProfiles ARF GTPase-activating proteins domain profile. 508 653 IPR001164 GO:0005096
Seca11g06555 815 CDD PH_ACAP 303 441 - -
Seca11g06555 815 ProSiteProfiles Ankyrin repeat region circular profile. 757 789 - -
Seca11g06555 815 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 490 654 - -
Seca11g06555 815 SUPERFAMILY PH domain-like 301 457 - -
Seca11g06555 815 ProSiteProfiles PH domain profile. 300 437 IPR001849 -
Seca11g06555 815 CDD ArfGap 511 640 - -
Seca11g06555 815 Gene3D - 652 812 IPR036770 -
Seca11g06555 815 MobiDBLite consensus disorder prediction 446 495 - -
Seca11g06555 815 Pfam BAR domain of APPL family 6 215 IPR004148 GO:0005515|GO:0005737
Seca11g06555 815 PRINTS HIV Rev interacting protein signature 539 556 IPR001164 GO:0005096
Seca11g06555 815 PRINTS HIV Rev interacting protein signature 562 583 IPR001164 GO:0005096
Seca11g06555 815 PRINTS HIV Rev interacting protein signature 520 539 IPR001164 GO:0005096
Seca11g06555 815 Pfam PH domain 302 436 IPR001849 -
Seca11g06555 815 ProSiteProfiles Ankyrin repeat region circular profile. 724 755 - -
Seca11g06555 815 Pfam Ankyrin repeats (many copies) 726 778 IPR002110 GO:0005515
Seca11g06555 815 ProSiteProfiles Ankyrin repeat profile. 724 756 IPR002110 GO:0005515
Seca11g06555 815 Gene3D Arfaptin homology (AH) domain/BAR domain 4 258 IPR027267 -
Seca11g06555 815 MobiDBLite consensus disorder prediction 446 465 - -
Seca11g06555 815 SUPERFAMILY BAR/IMD domain-like 6 323 IPR027267 -
Seca11g06555 815 ProSiteProfiles Ankyrin repeat profile. 757 789 IPR002110 GO:0005515
Seca11g06555 815 Gene3D Arf GTPase activating protein 489 651 IPR038508 -
Seca11g06555 815 MobiDBLite consensus disorder prediction 602 625 - -
Seca11g06555 815 Pfam Putative GTPase activating protein for Arf 511 646 IPR001164 GO:0005096
Seca11g06555 815 ProSiteProfiles Ankyrin repeat region circular profile. 790 815 - -
Seca11g06555 815 SMART 5bar 5 216 IPR004148 GO:0005515|GO:0005737
Seca11g06555 815 SUPERFAMILY ArfGap/RecO-like zinc finger 508 646 IPR037278 -
Seca11g06555 815 CDD BAR_SFC_plant 15 213 IPR035670 -
Seca11g06555 815 SMART arf_gap_3 508 653 IPR001164 GO:0005096
Seca11g06555 815 ProSiteProfiles Ankyrin repeat profile. 790 815 IPR002110 GO:0005515
Seca11g06555 815 PANTHER CENTAURIN/ARF 5 813 IPR045258 GO:0005096
Seca11g06555 815 Gene3D - 292 448 IPR011993 -
Seca11g06555 815 SMART PH_update 301 439 IPR001849 -
Seca11g06555 815 SMART ANK_2a 724 753 IPR002110 GO:0005515
Seca11g06555 815 SMART ANK_2a 757 786 IPR002110 GO:0005515
Seca11g06555 815 SUPERFAMILY Ankyrin repeat 663 805 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06555 Seca-Chr11 165947135 165957758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06555 512 669 C2H2 Transcription Factor Family AT4G21160 39.181 1.09e-22 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06555 K12489 - gmx:100792517 1281.16