Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06549 ATGGCACAAAATTCAGAGAAAAATTGTGAAGGTGTTGCTGAGTCTCCAGCTTCTACTACTCCACTTGGAAAACAACCAACAGAGGGTGGTGACCCCAAAACTGAAAGAATCAAAGCCACAAGACACCCTCGATGGACCAGACAAGAAACACTTGTTCTCATAGAGGCCAAGAAACTGGTTGAAAATGGAGAACAGGTTTCAAGATACAGATCAGCATCTGGGTTAGTTCACACTGACCCGAAATGGGATTTGGTTTCATCATTGTGTCAGCAACATGGTGTCAATAGAGGGGCTGTTCAGTGCAGAAAAAGATGGGGCAACCTTCTCACTGATTTCAGGAAGATCAAGAAATGGGAATCAAATATAAAAGAGGAGGCAGAGTCATTTTGGATTATGAGAAATGATGTCAGGAAAGAAAAGAAATTGCCAGGGTTCTTTGATGCTGTGGTGTACAATGTGTTGGATGGAGGGGTATGCACTGCTGCTGCATTTCCATTGACATTGATCAAAATGACACCAAAAGCAGATAATGTTGATCAAGTTGAAGCACTAATGGCGGCAGAGCAATGTAAGGAGGGTGAGGAGGAGGATGAGGAGGAAGATGAGGCTATTGTTGATAGTGAGAAAATGAGTTGGAGCACTGAAGAGGAAAACTATGACACAATGACAAATGGGAATAAGGTCAATGGTCCATTGCAAACACCAAGTCCTAACAAAACAGGCATGAGAGGGTGTCTCAAAATGACACCAGTATTACTCACTCTGCCTAGTTCAGGCTGTCAGAGAGAAGCCATGTTCCAAGAGGGGTACAAGAGAAGGAGATCAGCATCAGACAATTGTGAAGACACCACAAATTTCAATGACAATGTTATCAAAGTGCTAAGGAGGAATAGCAACATACTGAAAGCCCATATTGGATCTCAGAACGTGAATTACCAGTTGGCCAGGGACCAGCAGAAGCAGCAAACAGACAGCTTAGTTACAGCACTTGGCAAGCTCACTGATGCTCTCACAAAAATTGCTGACAAGCTGTAA 1035 0.4329 MAQNSEKNCEGVAESPASTTPLGKQPTEGGDPKTERIKATRHPRWTRQETLVLIEAKKLVENGEQVSRYRSASGLVHTDPKWDLVSSLCQQHGVNRGAVQCRKRWGNLLTDFRKIKKWESNIKEEAESFWIMRNDVRKEKKLPGFFDAVVYNVLDGGVCTAAAFPLTLIKMTPKADNVDQVEALMAAEQCKEGEEEDEEEDEAIVDSEKMSWSTEEENYDTMTNGNKVNGPLQTPSPNKTGMRGCLKMTPVLLTLPSSGCQREAMFQEGYKRRRSASDNCEDTTNFNDNVIKVLRRNSNILKAHIGSQNVNYQLARDQQKQQTDSLVTALGKLTDALTKIADKL. 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06549 344 Pfam Myb/SANT-like DNA-binding domain 43 132 IPR044822 -
Seca11g06549 344 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 18 344 - -
Seca11g06549 344 ProSiteProfiles Myb-like domain profile. 44 109 IPR001005 -
Seca11g06549 344 SMART sant 41 111 IPR001005 -
Seca11g06549 344 Gene3D - 45 114 - -
Seca11g06549 344 MobiDBLite consensus disorder prediction 191 205 - -
Seca11g06549 344 MobiDBLite consensus disorder prediction 190 212 - -
Seca11g06549 344 MobiDBLite consensus disorder prediction 221 240 - -
Seca11g06549 344 MobiDBLite consensus disorder prediction 1 25 - -
Seca11g06549 344 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06549 Seca-Chr11 165911485 165913486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06549 44 184 Trihelix Transcription Factor Family AT5G03680 24.324 4.93e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca11g06549 Myb_DNA-bind_4 3.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06549 - - tpra:123916032 490.73