LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g06548	ATGCCTTTTCAAATCATGGATCAGAGGGGCATTTCTGGCTCCTCCCACTTTTTTGATGACATTTCCTTTCATTCTGAGAGGAATGTTGGTTTGCGGAAGCCAAAATACATTAATGATCAACACCCACAAGGAAAGAATGGAATGATAGCATCACCTGGCAGTATCATGAATGCTTCATCACCCCTTGAAGTAAATGCAAATTCTGGCTTGTCAATGTCACAAACTAGTCTATCTGGGGAAAGTACAGTAAAGATATATTTTGGTGGAGAAGAAGGCGCTGTTGATGTGTTGAAGGATTCCAAGGAGTCATCGCATTATCATCCCAAATCATGGTCTGATGCGTGTATGCCGTCAGCACCTTCCTCATATGGTTTAATTGGGAAGAAGATTGTCACTAGTGCTGCCCCTTGTGAAAGTAGTTTATTCTCAAGCTCACTATCTGAGATATTTAGCCAAAAGTTGAGGTTATTTGGAAATGATGTTCTGTCTGAAGAGCCCATTACTGTTGATTACCTTCCTGAGGATGAACCATATAAATCTCTTGAGGAGATGGAGGCTGACACTATAGGGAAACTCCTTCCTGATGACGATGATCTGTTTTCTGGTGTTGTTGATGAGTTAGGATACAATTCTCATACCAAAACAAATGATGACTTGGAAGATTTTGATTTGTTTAGTAGTGGTGGAGGGATGGAGCTGGAAGGAGATGAACATTTATGTTCAGGAAAAAGAACAAGTGGTCTGGATGGAGATTCTGGTTTCTTTGGAGGATCTAAAGGAAAACTTCCTTTTGGTGAACAGCCTTCTAGAACACTTTTTGTTAGAAACATCAATAGTAATGTAGAAGACTCAGAGCTAAGGGCTCTTTTTGAGCAATATGGAGATATCCGAACCATTTATACAGCCTGTAAACATCGTGGGTTTGTTATGATTTCCTATTATGACACAAGGGAAGCACAAAATGCAATGCAAGCACTTCAAAATAGGCCATTGAGGTCTAGGAAACTTGATATACATTATTCAATTCCAAAGGTCAATGCTCCAGAGAAGGATATTGGCCATGGCACGCTGATGCTATCTGGTCTTGATTCATCTGTTTTAAATGATGAGCTTAAGCATATTTTTGGATTTTATGGAGAAATTAAAGAGATCTATGAATATCCCGAAATGAGTCATCACAAATTTATAGAGTTTTATGATGTGAGAGCTGCAGAAGCTGCTCTTCGTGCATTGAACAGGATTGAAATTGCTGGGAAGCAGATTAAGCTTGAACCTGGCCATCCTAGGTCCGCATCATGTCTGATGCAGCAGTCTCACAAGGGGCGAGATGAACGAGATCTTGGCCATAGTATTGTTGACAACTTTTCATTGAGACAAAAGTCAACAGTGTCTCCTGGAGTAGTTGGATCTAGCTGCTTGGAAAATGGATATAATCAGAGATTTCAATCTGCAATGCGGCAACCTTTGAATGCATTTATTGATAATGCATTCTTTCATGCAAATTCTAGCATTCACAACACTATGAGAGGGTCATCTGCTGGAAAAGTGTCTGGCGTTTCTGAGTCCAGTAACTTTGTTGATAGAATGAAACTCGCATCTAGTCCAAGATTTCATCCTCATTCATTGCCAGAGTTTCATGGTAGTTTAGCTAATGGTAGTCCTTATAACTTTTCAAGCACCAATAGCTACATGGCTAGAAATATAGGTACTGGAGGAACAGAAGCTACTGATGGCAGGCATATTCAGGGTATGAGCTCAACTGGAAACTTAGCAGAATTTAATGGAGGAGGGTCATCAGGAAATGGGATCCGCCCGCATCATGGACTTTATCATATGTGGAACAGCTCCAATTTGCATGAGCAACCTTCATCAAGTACCATGCTCTGGAAGAAAACACCATCATCATTCGTTAATGGTGCTTGTGCTCCATGCCTTCCGCAGAGGCCTAGCTTTGCTAGAACACCGCCTCATATGCTGAGAACACATATGGACCATCCTGTTGGATCAGCACCAGTTGTTACAGCCCTGCCCTGGGAAAGGAAAAATTCTTACTTGGGAGAGTCCCCTGAGGCTTCTGGTTTTCACTTGGGTTCTCTGGGAAGTGGAGGTTTTCATGGCTCCTGGCAATTGCATCCACTGGATTTTTCTTCTGACATGTTTTCTCATGTTGGTGGGAATGGCACTGAACTGACATCTAATGCTGCACAGAGCTCTCCGAAGCAGTTGTCACATGTTCTCCCTGGGACACATCCTATGATTTCAATGTCAAAATTTGATTCTACCAATGAACGAATGAGAAGCCTTTATCATCGTAGAAGTGAAGCAAACACCAACAATGTTGATAAAAAACAATATGAACTTGACTTAGGTCGTATAATGCGTGGGGAAGACATCCGGACAACGCTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTGCTGCCATAGATGAGCAATGTAAGGGAACGTATGATTTTCTGTACTTACCAATCGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATAAATATGATTGATCCTGTTCAAATTATTCCTTTCTACCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAAGTAGCCTCACTTGCATATGCCCGGATTCAAGGAAAAACTTCTCTTGTTGCTCATTTCCAGAATTCAAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTCTTCCATACAGATGGCCCAAATGCCGGTGATCCGGAGCCTTTTCCGGTGGGCGCCAATATTAGATTGAGACCTGGAAAATCTCGCAGCGCTGGCAATGAGGGGAGTCCTTCAACTTTGGCGAGCGGAGAAGAGTCTGCTAATGAAATAGATTCTTCAAGAAACTCTGACTAA	2901	0.4133	MPFQIMDQRGISGSSHFFDDISFHSERNVGLRKPKYINDQHPQGKNGMIASPGSIMNASSPLEVNANSGLSMSQTSLSGESTVKIYFGGEEGAVDVLKDSKESSHYHPKSWSDACMPSAPSSYGLIGKKIVTSAAPCESSLFSSSLSEIFSQKLRLFGNDVLSEEPITVDYLPEDEPYKSLEEMEADTIGKLLPDDDDLFSGVVDELGYNSHTKTNDDLEDFDLFSSGGGMELEGDEHLCSGKRTSGLDGDSGFFGGSKGKLPFGEQPSRTLFVRNINSNVEDSELRALFEQYGDIRTIYTACKHRGFVMISYYDTREAQNAMQALQNRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVLNDELKHIFGFYGEIKEIYEYPEMSHHKFIEFYDVRAAEAALRALNRIEIAGKQIKLEPGHPRSASCLMQQSHKGRDERDLGHSIVDNFSLRQKSTVSPGVVGSSCLENGYNQRFQSAMRQPLNAFIDNAFFHANSSIHNTMRGSSAGKVSGVSESSNFVDRMKLASSPRFHPHSLPEFHGSLANGSPYNFSSTNSYMARNIGTGGTEATDGRHIQGMSSTGNLAEFNGGGSSGNGIRPHHGLYHMWNSSNLHEQPSSSTMLWKKTPSSFVNGACAPCLPQRPSFARTPPHMLRTHMDHPVGSAPVVTALPWERKNSYLGESPEASGFHLGSLGSGGFHGSWQLHPLDFSSDMFSHVGGNGTELTSNAAQSSPKQLSHVLPGTHPMISMSKFDSTNERMRSLYHRRSEANTNNVDKKQYELDLGRIMRGEDIRTTLMIKNIPNKYTSKMLLAAIDEQCKGTYDFLYLPIDFKNKCNVGYAFINMIDPVQIIPFYQAFNGKKWEKFNSEKVASLAYARIQGKTSLVAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPVGANIRLRPGKSRSAGNEGSPSTLASGEESANEIDSSRNSD.	967

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g06548	966	FunFam	MEI2-like protein 5 isoform 2	259	353	-	-
	Seca11g06548	966	CDD	RRM1_MEI2_like	269	344	IPR034453	-
	Seca11g06548	966	Gene3D	-	354	455	IPR012677	-
	Seca11g06548	966	Pfam	RNA recognition motif 2	799	895	IPR007201	-
	Seca11g06548	966	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	270	343	IPR000504	GO:0003723
	Seca11g06548	966	SUPERFAMILY	RNA-binding domain, RBD	801	885	IPR035979	GO:0003676
	Seca11g06548	966	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	355	428	IPR000504	GO:0003723
	Seca11g06548	966	MobiDBLite	consensus disorder prediction	910	966	-	-
	Seca11g06548	966	FunFam	Protein MEI2-like 1	354	448	-	-
	Seca11g06548	966	Gene3D	-	264	353	IPR012677	-
	Seca11g06548	966	MobiDBLite	consensus disorder prediction	940	966	-	-
	Seca11g06548	966	SUPERFAMILY	RNA-binding domain, RBD	267	429	IPR035979	GO:0003676
	Seca11g06548	966	CDD	RRM3_MEI2_like	802	887	IPR034454	-
	Seca11g06548	966	SMART	rrm1_1	356	424	IPR000504	GO:0003723
	Seca11g06548	966	SMART	rrm1_1	801	877	IPR000504	GO:0003723
	Seca11g06548	966	SMART	rrm1_1	271	339	IPR000504	GO:0003723
	Seca11g06548	966	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	110	957	-	-
	Seca11g06548	966	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	272	336	IPR000504	GO:0003723
	Seca11g06548	966	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	357	422	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g06548	Seca-Chr11	165888389	165897284	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g06548	268	421	Eukaryotic Initiation Factors Gene Family	AT1G71770	25.153	1.87e-08	56.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g06548	-		-	gmx:100797893	1503.42