Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06545 ATGTCAGCTGTGGTCTCTGCCCTTGTTCAAGTCATTGGTGGCACTGATCCAATGCCTAAAGATCCAGTAACAACGTCCCACTTCAGTGATGCTCAGAATGAACAATCCCAAACACCCCAACATCAAGGAAATGTAAGAAGGAGTTACAGAGGAGTGAGGCAGCGTCCATGGGGGAAGTGGGCCGCAGAGATTCGCGATCCGAAGAAGGCAACGAGGGTTTGGCTTGGAACTTTTGACACTGCTGAAGCTGCTGCTCTTGCTTATGATGAAGCTGCTCTCACTTTCAAAGGAACCAAAGCTAAGCTTAATTTTCCTGAAATGGTTCATAGCATAGGCGGAGACCTCACAAATCGTCCACATCATCATCAATTTCATCATGCCATGTCATCAAATACTAATAATGAACAACCACGTGGCACTAGAAGAAGTGACGTGTTTGTTTCTTCTTCTTCATCATCGTCACCTTCACCACAACAAGAAGAAAAGCTTCTAACTTTCTCGTTAGGTTCTTCTGAGCCTCCTAGAAAGAATCGGACACCTGATCGATGA 549 0.4536 MSAVVSALVQVIGGTDPMPKDPVTTSHFSDAQNEQSQTPQHQGNVRRSYRGVRQRPWGKWAAEIRDPKKATRVWLGTFDTAEAAALAYDEAALTFKGTKAKLNFPEMVHSIGGDLTNRPHHHQFHHAMSSNTNNEQPRGTRRSDVFVSSSSSSSPSPQQEEKLLTFSLGSSEPPRKNRTPDR. 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06545 182 PANTHER DNA-BINDING DOMAIN 31 157 IPR044808 GO:0003700|GO:0009873
Seca11g06545 182 CDD AP2 49 106 IPR001471 GO:0003700|GO:0006355
Seca11g06545 182 MobiDBLite consensus disorder prediction 126 174 - -
Seca11g06545 182 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Seca11g06545 182 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Seca11g06545 182 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Seca11g06545 182 Gene3D AP2/ERF domain 47 107 IPR036955 GO:0003700|GO:0006355
Seca11g06545 182 SUPERFAMILY DNA-binding domain 49 106 IPR016177 GO:0003677
Seca11g06545 182 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Seca11g06545 182 MobiDBLite consensus disorder prediction 14 52 - -
Seca11g06545 182 Pfam AP2 domain 49 97 IPR001471 GO:0003700|GO:0006355
Seca11g06545 182 FunFam Ethylene-responsive transcription factor 2 47 106 - -
Seca11g06545 182 MobiDBLite consensus disorder prediction 25 47 - -
Seca11g06545 182 MobiDBLite consensus disorder prediction 113 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06545 Seca-Chr11 165849567 165852579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06545 1 130 AP2-EREBP Transcription Factor Family AT5G61890 51.974 1.89e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca11g06545 AP2 3.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06545 - - gmx:100793410 182.57