Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06525 ATGGCGAAATCAAGTTCAACCACGGTAACATTCAAACCAGCATGGGTTCTTCCGTACCGTACCCAGCACATAACAGAGGTGTACACCATGGGTAGAAAACTAGGTCAGGGTCAATTTGGGACAACGTTTCTTTGCACTCACAAGGTAACAGGTGGTAGGTACGCTTGCAAGTCTATTCCGAAACGGAAGCTTCTGTGCAAAGAGGATTACGACGACGTTTGGAGGGAGATTCAGATAATGCACCACTTATCTGAACATCCTCACGTGGTGCGAATCGAAGGAACCTATGAGGATTCCTCTGCTGTTCACCTGGTTATGGAGCTGTGTGAAGGAGGAGAGTTATTTGACAGGATCGTGCAGAAAGGACACTACAGTGAGAGACAAGCTGCGAAGTTGATAAAGACTATTGTTGAGGTTGTGGAGTCTTGTCACTCTCTTGGTGTGATGCATAGAGACCTTAAGCCTGAGAATTTCCTCTTTGATACTGTTGATGAGGATGCTAAGCTTAAAGCTACCGATTTTGGTTTGTCTGTTTTTTATAAGCCTGCTACTGTGCCTAATACAGTCATATACATTTCAGGTGAATCCTTTTGTGATGTTGTTGGGAGCCCATATTATGTTGCACCAGAGGTTTTGCGCAAGCTCTATGGACATGAATCAGATGTGTGGAGTGCCGGGGTTATTCTGTACATCTTATTAAGTGGGGTGCCACCATTTTGGGCCGAAACTGAACCAGGGATATTCCGACAGATTTTACTTGGAAAACTTGATTTTCAGTCTGAGCCTTGGCCTAGTATTTCTGATAGCGCAAAGGATCTAATTCGGAAAATGCTTGATCAAAATCCAAAAACAAGGCTTACAGCACATGAAGTACTCCGCCACCCATGGATTGTTGATGACAACATTGCACCAGATAAGCCTCTTGATTCTGCGGTTTTATCACGTCTGAAACAATTCTCTGCAATGAATAAACTAAAAAAGATGGCTTTGCGTGTTATTGCTGAGAGGCTATCTGAGGAAGAAATTGGTGGCCTGAAAGAGTTATTCAAGATGATTGACACAGACAGCAGTGGAAGCATAACATTTGATGAGTTAAAAGATGGCTTGAAGCGAGTAGGATCTGAGCTTATGGAGTCTGAAATCAAGGATCTTATGGATGCTGCGGATATTGATAACAGTGGAACAATTGACTATGGTGAGTTCATTGCCGCCACTGTTCATCTAAATAAGCTTGAGAGAGAGGAAAATCTGTTGTCAGCCTTCTCCTATTTTGACAAAGATGGTAGTGGTTACATAACCATTGATGAGATTCAACAAGCTTGTAAGGACTTTGGTTTAGACGATGTCCACATTGATGAAATGATCAAGGAAATTGATCAAGATAACGATGGACAAATAGATTATGGGGAATTTGCTGCCATGATGAGAAAGGGCAATGGAGGGATAGGAAGGCGAACTATGAGAAAGACACTAAATTTAAGAGATGCTCTGCAGTTAGTAGGCCATTGA 1509 0.4248 MAKSSSTTVTFKPAWVLPYRTQHITEVYTMGRKLGQGQFGTTFLCTHKVTGGRYACKSIPKRKLLCKEDYDDVWREIQIMHHLSEHPHVVRIEGTYEDSSAVHLVMELCEGGELFDRIVQKGHYSERQAAKLIKTIVEVVESCHSLGVMHRDLKPENFLFDTVDEDAKLKATDFGLSVFYKPATVPNTVIYISGESFCDVVGSPYYVAPEVLRKLYGHESDVWSAGVILYILLSGVPPFWAETEPGIFRQILLGKLDFQSEPWPSISDSAKDLIRKMLDQNPKTRLTAHEVLRHPWIVDDNIAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDSSGSITFDELKDGLKRVGSELMESEIKDLMDAADIDNSGTIDYGEFIAATVHLNKLEREENLLSAFSYFDKDGSGYITIDEIQQACKDFGLDDVHIDEMIKEIDQDNDGQIDYGEFAAMMRKGNGGIGRRTMRKTLNLRDALQLVGH. 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06525 502 CDD EFh 417 476 IPR002048 GO:0005509
Seca11g06525 502 ProSiteProfiles EF-hand calcium-binding domain profile. 412 447 IPR002048 GO:0005509
Seca11g06525 502 ProSitePatterns EF-hand calcium-binding domain. 459 471 IPR018247 -
Seca11g06525 502 FunFam Calcium-dependent protein kinase SK5 207 302 - -
Seca11g06525 502 Pfam EF-hand domain pair 415 476 IPR002048 GO:0005509
Seca11g06525 502 ProSiteProfiles EF-hand calcium-binding domain profile. 340 375 IPR002048 GO:0005509
Seca11g06525 502 ProSitePatterns EF-hand calcium-binding domain. 425 437 IPR018247 -
Seca11g06525 502 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509
Seca11g06525 502 SMART efh_1 416 444 IPR002048 GO:0005509
Seca11g06525 502 SMART efh_1 380 408 IPR002048 GO:0005509
Seca11g06525 502 SMART efh_1 450 478 IPR002048 GO:0005509
Seca11g06525 502 SMART efh_1 344 372 IPR002048 GO:0005509
Seca11g06525 502 FunFam Calcium-dependent protein kinase SK5 410 502 - -
Seca11g06525 502 Gene3D - 338 409 - -
Seca11g06525 502 ProSitePatterns EF-hand calcium-binding domain. 389 401 IPR018247 -
Seca11g06525 502 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524
Seca11g06525 502 Gene3D - 410 502 - -
Seca11g06525 502 Pfam EF-hand domain pair 357 407 IPR002048 GO:0005509
Seca11g06525 502 Gene3D Transferase(Phosphotransferase) domain 1 115 337 - -
Seca11g06525 502 ProSiteProfiles Protein kinase domain profile. 28 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06525 502 CDD EFh 345 404 IPR002048 GO:0005509
Seca11g06525 502 SUPERFAMILY EF-hand 336 477 IPR011992 -
Seca11g06525 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Seca11g06525 502 SUPERFAMILY Protein kinase-like (PK-like) 25 309 IPR011009 -
Seca11g06525 502 Pfam Protein kinase domain 28 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06525 502 ProSiteProfiles EF-hand calcium-binding domain profile. 450 481 IPR002048 GO:0005509
Seca11g06525 502 ProSitePatterns EF-hand calcium-binding domain. 353 365 IPR018247 -
Seca11g06525 502 Gene3D Phosphorylase Kinase; domain 1 30 114 - -
Seca11g06525 502 PANTHER SERINE/THREONINE-PROTEIN KINASE 23 471 - -
Seca11g06525 502 CDD STKc_CAMK 27 296 - -
Seca11g06525 502 SMART serkin_6 28 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06525 502 FunFam calcium-dependent protein kinase SK5 334 406 - -
Seca11g06525 502 FunFam CDPK-related kinase 3 20 188 - -
Seca11g06525 502 FunFam Calcium-dependent protein kinase 1 30 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06525 Seca-Chr11 165663965 165669000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06525 16 496 EF-hand Containing Proteins AT1G35670 76.971 0.0 768
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca11g06525 Pkinase 1.3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06525 K13412 - gmx:100806678 914.064