Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06522 ATGGGTAGATCTCCTTGTTGTGAGAAAGAGCACACAAACAAAGGAGCTTGGTCCAAAGAAGAAGACGAACGCCTCGTCAACTACATCAAGGTCCATGGCGAAGGTTGTTGGAGATCTCTCCCCAAAGCAGCAGTTGGAACAACAGGCTTGCTTCGATGCGGCAAGAGTTGCAGATTGAGATGGATAAATTACCTGAGACCTGATCTCAAGAGAGGAAACTTCACTGATGAAGAAGATGATCTCATCATCAACCTCCACGGCGTGCTTGGAAACAAGTGGTCTATAATAGCTTCGAGGCTACCAGGAAGAACAGATAACGAGATCAAGAACTATTGGAACACTCACATCAAGCGCAAACTCTATAGCCGCGGAATCGATCCGGTAACTCATCAACCACTCAAAGGCGCGGGCGGCGCATCTTCCTCAAAAACCTCCACCGCCGCCGCGGCCGATGCGGCTCCACCTGCTAATAACGCCGCAGTTCCGCCGCCTGTGGTTACCACAAGCAAGAAGGGAAGTAGCAATGAAGAAAGCAGTAGCAGCGTTGTCACTAGCAGCAATAACAACAATCTGAATCAGCAGAGCAAGGAGATTTTTCAGTTATTTGGTGCCTATATGAATTCCTCTAACAAGTTTGTTAATGGAACTGAACAGTCCTCAGTTGGTGAAGATTCAAATAGCAGCAGTGGTGTTACTGTTACTACCACAGAGGAAGCTTATCCTCCAATCAACTTAGAGCTTTCCTTATCTCCACCCTCTCAAGTGGTTTCTTCTTCTGTTGAACAACGAGTTTTCTATCCGTTGCAACAATATGGTGGTGGAAACGCTGTTAGTAGTAGCCAAGGTGTGATGTGCCTGTGTAACCGTCTAGGGTTACGAAGCAACGGAGCTTGTAACTGCAAAGCCGTGGGTTCTGGTGCTGCTGCTGCTACAGTTACTCCACCTGCTGCCACCAACAATGATGTGTACAGTTTTTTCTCGGAGCCAAAAATTTGA 996 0.4729 MGRSPCCEKEHTNKGAWSKEEDERLVNYIKVHGEGCWRSLPKAAVGTTGLLRCGKSCRLRWINYLRPDLKRGNFTDEEDDLIINLHGVLGNKWSIIASRLPGRTDNEIKNYWNTHIKRKLYSRGIDPVTHQPLKGAGGASSSKTSTAAAADAAPPANNAAVPPPVVTTSKKGSSNEESSSSVVTSSNNNNLNQQSKEIFQLFGAYMNSSNKFVNGTEQSSVGEDSNSSSGVTVTTTEEAYPPINLELSLSPPSQVVSSSVEQRVFYPLQQYGGGNAVSSSQGVMCLCNRLGLRSNGACNCKAVGSGAAAATVTPPAATNNDVYSFFSEPKI. 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06522 331 CDD SANT 73 116 IPR001005 -
Seca11g06522 331 ProSiteProfiles Myb-like domain profile. 9 65 IPR001005 -
Seca11g06522 331 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 209 - -
Seca11g06522 331 Pfam Myb-like DNA-binding domain 14 65 IPR001005 -
Seca11g06522 331 Pfam Myb-like DNA-binding domain 71 115 IPR001005 -
Seca11g06522 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Seca11g06522 331 MobiDBLite consensus disorder prediction 127 189 - -
Seca11g06522 331 Gene3D - 73 120 - -
Seca11g06522 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Seca11g06522 331 MobiDBLite consensus disorder prediction 162 189 - -
Seca11g06522 331 SUPERFAMILY Homeodomain-like 13 112 IPR009057 -
Seca11g06522 331 FunFam MYB transcription factor 72 133 - -
Seca11g06522 331 SMART sant 13 67 IPR001005 -
Seca11g06522 331 SMART sant 70 118 IPR001005 -
Seca11g06522 331 Gene3D - 14 70 - -
Seca11g06522 331 CDD SANT 16 65 IPR001005 -
Seca11g06522 331 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Seca11g06522 331 MobiDBLite consensus disorder prediction 215 234 - -
Seca11g06522 331 FunFam MYB-related transcription factor 13 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06522 Seca-Chr11 165637027 165638209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06522 1 143 MYB Transcription Factor Family AT4G38620 79.021 6.89e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca11g06522 Myb_DNA-binding 4.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06522 K09422 - gmx:778033 298.13