Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06521 ATGGAGAGGAAAACACTAGGATTTTTGTGCTTGCTCCTTGTTATCTTAGCTGCTGATGTGGCGGTGAAGAGAGTGGAGGGGAGAATGTGCGAGTCAAAGAGCCACAGTTTCAAGGGTCCATGTGTGAGTGAGAGCAACTGTGGACATGTCTGCAGGACCGAAGGTTTTCTCGCTGGCAATTGCAGAGGCTTCCGTCGCCGCTGCTTTTGCACCAAGTATTGTTCAACTTAA 231 0.4935 MERKTLGFLCLLLVILAADVAVKRVEGRMCESKSHSFKGPCVSESNCGHVCRTEGFLAGNCRGFRRRCFCTKYCST. 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06521 76 ProSitePatterns Gamma-thionins family signature. 28 51 IPR008176 GO:0006952
Seca11g06521 76 PRINTS Purothionin signature 59 73 IPR008176 GO:0006952
Seca11g06521 76 PRINTS Purothionin signature 29 44 IPR008176 GO:0006952
Seca11g06521 76 Gene3D - 28 74 IPR036574 -
Seca11g06521 76 SMART gth_4 29 74 IPR003614 GO:0006952
Seca11g06521 76 CDD Knot1 39 71 IPR003614 GO:0006952
Seca11g06521 76 Pfam Gamma-thionin family 28 74 - -
Seca11g06521 76 PANTHER DEFENSIN-LIKE PROTEIN 1 5 74 - -
Seca11g06521 76 SUPERFAMILY Scorpion toxin-like 28 74 IPR036574 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06521 Seca-Chr11 165614001 165614574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06521 9 74 Plant Defensins Gene Families AT2G02100 57.576 1.31e-24 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06521 - - rvl:131336308 95.5153