Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06519 ATGGATAAGTACGAGACCGTGAAGGATTTGGGAGCTGGGAATTTTGGGGTGGCTAGGCTCATGAGGAACAAGGAGACCAAGGAGCTCGTTGCCATGAAATACATCGAGCGTGGCCACAAGATTGATGAGAATGTGGCGAGAGAGATTATCAACCACAGGTCCCTTCGGCATCCCAATATAATTCGCTTCAAGGAGGCAAGGCCTTTGTTTGCCAGTGGGGCTTTGATTTTGCAGGTGGTTTTGACTCCCACCCATTTAGCAATAGTAATGGAGTATGCAGCTGGAGGAGAACTCTTTGAGAGGATATGCAATGCTGGCAGATTCAGTGAAGATGAGGCTAGATATTTCTTTCAGCAGCTGATATCTGGTGTCCATTACTGTCATGCCATGCAAATATGCCACAGAGATTTGAAGCTAGAAAATACCCTTTTAGATGGAAGCCCTGCACCCCGCTTGAAAATTTGTGACTTCGGTTATTCCAAGTCATCTTTGCTTCATTCACGACCCAAATCAACTGTTGGAACTCCAGCCTATATAGCACCAGAGGTTCTTTCTAGGAGGGAGTATGATGGCAAGTTGGCTGATGTGTGGTCATGTGGAGTGACTCTTTATGTCATGCTGGTGGGAGCATATCCCTTTGAGGATCAGGATGACCCTAGGAATTTTAGGAAAACAATTCAGCGTATAATGGCTGTTCAATACAAAATCCCTGATTATGTTCACATATCTCAAGATTGCAGACACCTCCTTTCTCGTATATTTGTAGCAAATCCATTAAGGAGAATTACTCTTAAGGAAATTAAGAACCACCCATGGTTTTTAAAGAATCTTCCAAGGGAGCTAACTGAATCTGCTCAAGCTATCTATTACCAGAGAGGAGGCAACCCAAGCTTTTCTGTTCAGAGTGTGGATGAGATAATGAAAATAGTGGGAGAGGCAAGAGAACCTCCTCCAATATCTAGGCCTGTAAAAGGTTTTGGCTGGGAAGGTGAAGAGGATGAAGGGGAAGAAGATGTGGATGCAGAGGTGGAGGAAGAGGAAGAGGATGAAGAAGATGAGTATGATAAGAGGGTGAAAGAGGTTCATGCAAGTGGAGAATTTCAAATCAGTTAA 1113 0.4403 MDKYETVKDLGAGNFGVARLMRNKETKELVAMKYIERGHKIDENVAREIINHRSLRHPNIIRFKEARPLFASGALILQVVLTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVHYCHAMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPRNFRKTIQRIMAVQYKIPDYVHISQDCRHLLSRIFVANPLRRITLKEIKNHPWFLKNLPRELTESAQAIYYQRGGNPSFSVQSVDEIMKIVGEAREPPPISRPVKGFGWEGEEDEGEEDVDAEVEEEEEDEEDEYDKRVKEVHASGEFQIS. 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06519 370 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Seca11g06519 370 MobiDBLite consensus disorder prediction 318 370 - -
Seca11g06519 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Seca11g06519 370 PANTHER SERINE/THREONINE KINASE 3 315 - -
Seca11g06519 370 SMART serkin_6 4 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06519 370 SUPERFAMILY Protein kinase-like (PK-like) 1 292 IPR011009 -
Seca11g06519 370 Gene3D Phosphorylase Kinase; domain 1 1 92 - -
Seca11g06519 370 Pfam Protein kinase domain 4 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06519 370 Gene3D Transferase(Phosphotransferase) domain 1 93 281 - -
Seca11g06519 370 FunFam Serine/threonine-protein kinase SRK2A 93 281 - -
Seca11g06519 370 ProSiteProfiles Protein kinase domain profile. 4 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06519 370 MobiDBLite consensus disorder prediction 330 354 - -
Seca11g06519 370 CDD STKc_SnRK2 3 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06519 Seca-Chr11 165589730 165592943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06519 3 276 CBL-interacting serine-threonine protein kinases AT2G26980 40.702 3.02e-64 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Seca11g06519 Pkinase 2.1e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06519 K14498 - gmx:547968 644.425