Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06513 ATGCTCCCTTTGAAGGATCTTGCTGATTCTATTGCTGAAAAATTGCAGGAACGTTTATTTGTGGGTGCTGAACTGTATGGGAAAAAGGATGATGGAGTATGTCCATGCAGAATATTAAAAGTCATCCAAGAAGGGGTTGACAAATTCTGTTATGAGGTAGCTTGGCTTGACAAAAACAAGAACGTAAGTGAAAAAGCAGAACTCGGTGCAGAAGATTTGGTGCAAAAGAAGCCGCTTTTTAGTAGAAATATGCTAAAGTCTTTTATTCGGGAATCTACATATCGAAATGCCCCTTGGGTTTTACATGATGAACTGGCTCAAAATCATGGAATCTCAACTGACATTCCTGAGGAGTTAAGAGGAAAGGTGTTTTTCAAGGATGGACTTTTAGTTTGCTCCAAGAAAAGGAAAAATGAGGAATCAATGGAAGAAGATAACTGTAAAAGGAAGAAGTTGGATGAGACACTAGTCAATGGTTCTGCCCAAGAGAAAGAAAATGGTAAACACAAGGAAAAACCAATCAAATATCCTATTGATGATCTATTGGTGAAACCTAGTCCAGATGATCCTGTTTTCACTGATCGTCCTTCTCCATTGAGAGACTTCAATATCCCAATGCATTGTGTTGGGGACCTCTTAATGGTTTGGGATTTGTGTACTTCTTTTGGTAAAGTGTTGCACTTGTGGCCCTACTCTCTAGAAGATTTTGAAAATGCAATCTGCCATAAGGATAGCAATGTGGTTCTCCTTGTGGAATCTCACGCTGCACTTTTTCGGGTTCTCATCAAAGATGATGGTGAATACTCTTCAGCTGTAAAGAAACGAAAGTTGAAGAAGATTACATTGATTAACTGGACAGAATATTTATGCGATTTTCTAGAAATGATCAATATTCCTAGACTACGGAACTATGAAGCCACCATAAAACGGGGACATTATGGCCTTGTTGACATCAATGCTAAATTAGAAATCTTGTGTGAATTGGTTAATCGAGCCCTTGAAACTGATATTTTCCGGGAAAAGTTGGATGAATTTATTGAACAGCGGCAAGCACTTGGGGCCTCTAGAAGGGAAGAAGCACTGGAAGATGGTAGGAAGAGAAGAGAAGAAAAGGAGCGGTTGAAAGCTGAGTCCGAAAGCAATGGCATTGTGGATGGGCATCATCTGGACAGTGAAAATGGCTTAACAAACACTAATCACATCATACAAAATGGAGATGGGGGAAAGAAAAGAAATGGAGAGATAGAATCATCTGTCCAAAACAATCCATTGGATGGAAGTGGGATCAAGCATTCAAATCATGCTTCAAGGAAGACACCCAAAAAGCTGAATTCAGAACTGAAAGAACCAGCTGAAAATGGAAAAGAATTATCCAGAAAGGAATTGCTGAAACAGTCGAAGGGTGATAAGGATTCACCAGAGAAGAATAGTAAAGACCATAGGAAAGAATATTTTGAACGGGAGATGGAGAAACGAATTATTCGTAGAAGCCCATTAGGCAAGGACAGAGATTACAATAGGTATTGGTGGTTCCGTCGTGATGGGAGGATATTCGTTGAAAGCTGTGACTCCAAGGAGTGGGGATACTACAGCAGCAAGGAAGAGCTTGATGCATTGATGGGTTCACTGAATTGCAAGGGTGAGCGGGAAAGGGCTCTGCGAAAACAACTGGAAAAATATTATAGTAGCATATGCTCAGAACTCCAGAAAAGATCGAAGGATTTGATGCATAGTATTGCGAATGATGAGTCTGTGCTTCGAAGGTCTACTCGTGTTCGAGCTCCACCCAGGGAAAACCCTGCCAATGCTTTCCTCAGATATGTGAACAAGTGGAAAGAAGAGTAG 1845 0.4054 MLPLKDLADSIAEKLQERLFVGAELYGKKDDGVCPCRILKVIQEGVDKFCYEVAWLDKNKNVSEKAELGAEDLVQKKPLFSRNMLKSFIRESTYRNAPWVLHDELAQNHGISTDIPEELRGKVFFKDGLLVCSKKRKNEESMEEDNCKRKKLDETLVNGSAQEKENGKHKEKPIKYPIDDLLVKPSPDDPVFTDRPSPLRDFNIPMHCVGDLLMVWDLCTSFGKVLHLWPYSLEDFENAICHKDSNVVLLVESHAALFRVLIKDDGEYSSAVKKRKLKKITLINWTEYLCDFLEMINIPRLRNYEATIKRGHYGLVDINAKLEILCELVNRALETDIFREKLDEFIEQRQALGASRREEALEDGRKRREEKERLKAESESNGIVDGHHLDSENGLTNTNHIIQNGDGGKKRNGEIESSVQNNPLDGSGIKHSNHASRKTPKKLNSELKEPAENGKELSRKELLKQSKGDKDSPEKNSKDHRKEYFEREMEKRIIRRSPLGKDRDYNRYWWFRRDGRIFVESCDSKEWGYYSSKEELDALMGSLNCKGERERALRKQLEKYYSSICSELQKRSKDLMHSIANDESVLRRSTRVRAPPRENPANAFLRYVNKWKEE. 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06513 614 Coils Coil 357 381 - -
Seca11g06513 614 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 494 560 IPR028941 -
Seca11g06513 614 MobiDBLite consensus disorder prediction 391 405 - -
Seca11g06513 614 ProSiteProfiles WAC domain profile. 1 31 IPR013136 -
Seca11g06513 614 MobiDBLite consensus disorder prediction 414 429 - -
Seca11g06513 614 ProSiteProfiles DDT domain profile. 206 267 IPR018501 -
Seca11g06513 614 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 612 - -
Seca11g06513 614 SMART testlast3 206 267 IPR018501 -
Seca11g06513 614 MobiDBLite consensus disorder prediction 356 386 - -
Seca11g06513 614 Pfam DDT domain 207 264 IPR018501 -
Seca11g06513 614 MobiDBLite consensus disorder prediction 439 483 - -
Seca11g06513 614 MobiDBLite consensus disorder prediction 356 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06513 Seca-Chr11 165539476 165547404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06513 475 564 Homeobox Transcription Factor Family AT1G28420 37.374 5.88e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Seca11g06513 WSD 4.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06513 - - gmx:100789956 941.414