Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06502 ATGGCTGCTCCTCCTGTGAACCCTTTACCAGTAGCATACCAAGCATGGACGAGTCTTGCAGTACCAGATTGGTTGAACAAAGGAGACAACTCATGGCAAATGGTAGCAGCTACCCTTGTGGGGATTCAGAGCATGCCAGGGCTAGTCATTCTCTATGGCAGCATTGTCAAGAAGAAATGGGCTGTGAACTCTGCTTTCATGGCTCTGTATGCATTTGCAGCAGTTATCATTTGTTGGGTTACATGGGCTTACAAGATGTCTTTTGGGGAAAAGCTTTTACCTTTTTGGGGTAAAGCTGGGCCCGCTTTGGGGCAGAAGTTTCTCATCAAACAGGCCGGGCTACCCGCCACGCCACATTATTTTCATAATGGTGATTTGGAGACTGCTGAGATTGAACCCTTTTATCCCATGGCCACTATGGTGTGGTTCCAATGTGTATTTGCTGCCATTGCTCTTGTTATCTTGGCTGGATCTGTGTTGGCTAGGATGAATTTCAAGGCGTGGATGATGTTTGTGCCACTTTGGCTCACTTTTTCTTACACTGTTGGGGCTTTTAGTTTGTGGGGTGGTGGCTTCTTGTTCCAATGGGGTGTTATGGACTACTCTGGTGGTTATGTCATTCATCTTTCTTCCGGGATTGCTGGATTCACTGCTGCTTATTGGGTGGGGCCAAGATCGAAGAAAGACAGGGAGAGATTCCCACCAAACAATGTGTTACTAACATTGACAGGAGCAGGGCTACTATGGCTGGGATGGGCTGGTTTCAACGGAGGAGATCCCTACGCCGCTAACACTGACTCCTCCATGGCGGTGCTCAACACCAACGTGTGCGCCGCCACCAGCCTCCTTGTGTGGACGTGGCTTGATGTCATTTTCTTCAAGAAACCCTCAGTTATTGGAGCAGTTCAGGGCATGATCACTGGCCTTGTTTGCATCACTCCCGCGGCTGGTCTGGTTCAAGGATGGGCTGCCATAGTGATGGGAGTGCTTTCAGGCAGTGTGCCATGGTACACCATGATGGTACTTGGCAAGAAGTTTTCAGTGTTTCAAAAGGTTGATGACACCCTTGCTGTGTTCCACACTCATGCTGTCGCTGGCCTTCTAGGTGGTGTCCTCACTGGCCTATTTGCTGAGCCCCGTTTAAGTGCACTCTTTCTGCCCGTATCAAATTCCCAAGGAGGGGTCTATGGAGGCTCTGCAGGTGGAGTCCAAATCCTTAAACAAATCGTGGGAGGTTTTTTCATAGTTGGATGGAACCTTGTGGCTACTTCAATTATTTGTCTCGTTATAAAGTTGATTGTGCCACTCAGAATGACAGAGGAAGAGTTGCTAATTGGGGATGATGCAGTTCATGGGGAAGAAGCTTATGCTCTGTGGGGTGATGGAGAGAAACTTTCCCTCTACAAAGATGATACCACCCGCCATGGAATAATCGCCTCAAGTGGTGCCACTCAAGTGGTCTAA 1464 0.4863 MAAPPVNPLPVAYQAWTSLAVPDWLNKGDNSWQMVAATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVIICWVTWAYKMSFGEKLLPFWGKAGPALGQKFLIKQAGLPATPHYFHNGDLETAEIEPFYPMATMVWFQCVFAAIALVILAGSVLARMNFKAWMMFVPLWLTFSYTVGAFSLWGGGFLFQWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSKKDRERFPPNNVLLTLTGAGLLWLGWAGFNGGDPYAANTDSSMAVLNTNVCAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPAAGLVQGWAAIVMGVLSGSVPWYTMMVLGKKFSVFQKVDDTLAVFHTHAVAGLLGGVLTGLFAEPRLSALFLPVSNSQGGVYGGSAGGVQILKQIVGGFFIVGWNLVATSIICLVIKLIVPLRMTEEELLIGDDAVHGEEAYALWGDGEKLSLYKDDTTRHGIIASSGATQVV. 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06502 487 PANTHER AMMONIUM TRANSPORTER MEP2 17 465 IPR001905 GO:0008519|GO:0016020|GO:0072488
Seca11g06502 487 ProSitePatterns Ammonium transporters signature. 200 225 IPR018047 GO:0008519|GO:0016020|GO:0072488
Seca11g06502 487 Gene3D Ammonium transporter AmtB like domains 11 459 IPR029020 -
Seca11g06502 487 NCBIfam ammonium transporter 29 456 IPR001905 GO:0008519|GO:0016020|GO:0072488
Seca11g06502 487 SUPERFAMILY Ammonium transporter 24 438 - -
Seca11g06502 487 FunFam Ammonium transporter 12 459 - -
Seca11g06502 487 Pfam Ammonium Transporter Family 32 456 IPR024041 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06502 Seca-Chr11 165414448 165420113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06502 137 475 Inorganic Solute Cotransporters AT2G38290 70.796 8.36e-168 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06502 K03320 - gmx:100785993 890.952