Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06501 ATGTTCCGCTCAAATTTTAGCAGGGGTCCTCTCAAAATATTGACAAGGTGGCTCATATTCCTTTTTGTCTTGAAACTCAGTTATGCAGTCAAAGATCCTGATGTAGAAGGTGAAGCTCTGCTTGATCTTTTGAATTACCTCAATGATTCCAATCATCAAATAACAGACTGGGATAGTCATTTAGTGAGCCCATGCTTCAGTTGGTCTCATGTCACTTGTAGAAACGGACAAGTCATATCTTTGTCCCTGGCTTCCATTGGATTTTCCGGAACATTGTCTCCCTCAATTGCCAAATTGAAATATTTGGTTAGCTTGGAATTGCAGAACAACAATCTTTCAGGCTCTTTACCTGATTACATTGCTGACTTGACTGACCTACAATATCTAAATCTTGCTGGCAATAATTTTAATGGTCCTATACCATCCAAATGGGGTCAACTATCAAGTCTAAAGCATCTGGATCTTTCATCTAATGGTCTTTCTGGAAGTATTCCAACACAACTCTTTTCAGTGCCATTGTTTAACTTTTCAGATAATCACCTTCAATGTGATGCTAGCTTCGATCAGCCTTGTGTTTCTAAATCTGAACATCCAGCTTCAACCAACAAATCAAAACTAGCAAAAGTTGTACGTTTTGCAAGTTGTGGTGCATTTGCAATTCTCTGTCTTGGGGCTATCTTTACATATAGATACCACCAAACGCGCAGACACAAAAGTGACATCTTTGTTGATGTTTCAGGTGAAGATGAGAGCAAAATTTCTTTTGGGCAATTGAGGAAATTTTCTTGGCGTGAAATCCAACTTGCTACTAAAAATTTCAGTGAAAGCAATGTAATTGGCCAAGGTGGTTTTGGAAAAGTTTACAAAGGAGTACTCTCAGATAACACAAAAGTTGCTGTGAAACGCCTCACTGATTATCATAATCCTGGTGGAGAAGCTGCATTTGAGAGAGAAGTTCTACTTATAAGTGTTGCAGTTCATAGAAACCTCCTAAGGCTAATTGGGTTCTGTACAACCTCAACTGAAAGAATCCTTGTATACCCTTTCATGGAAAATCTAAGTGTAGCATATCGATTGAGAGATTTAAAACCTGATGAGAAAGGGTTGGATTGGCCAACAAGGAAACGTGTGGCTTTTGGTACAGCACAAGGTTTGGAGTATCTACATGAGCAATGCAATCCAAAGATAATACATCGTGATCTAAAGGCTGCAAATATCCTACTAGATGATGAGTTTGAAGCTGTTCTAGGTGATTTTGGGCTAGCCAAGCTGGTTGATGCAAGGATGACTCATGTTACCACTCAAGTGAGGGGTACAATGGGTCATATTGCCCCAGAATATTTGTCCACTGGAAAATCATCAGAGAAGACAGATGTTTTTGGATATGGCATAACACTTCTTGAACTAGTCACTGGCCAGCGTGCAATAGACCTCTCTAGGCTTGAAGAGGATGAGGATGTTCTTCTAATTGATCATGTAACATCTTCTGTCTGTTTCACTCATTACGTTAAGAAGCTACTGAGAGAAAATAGGTTGGAGGATATAGTGGATAGAAATTTGGAGAGTTATGATCCAAAAGAAGTTGAGACCATTCTTCAGGTTGCATTACTTTGCACACAAGGCTTTCCTGAGGATCGTCCAACCATGTCAGAGGTAGTGAAAATGCTGCAGGGTGTGGGATTGGCAGATAGATGGGCTGATTGGAAGCAACTTGAAGAGGCTAGGAATCAAGAGTTCTCACTCATGACTCACCAATTTGTTTGGAGTGATGAATCTACTCTTGATCAAGAAGCTATACAGCTTTCCAAAGCAAGATAG 1818 0.3988 MFRSNFSRGPLKILTRWLIFLFVLKLSYAVKDPDVEGEALLDLLNYLNDSNHQITDWDSHLVSPCFSWSHVTCRNGQVISLSLASIGFSGTLSPSIAKLKYLVSLELQNNNLSGSLPDYIADLTDLQYLNLAGNNFNGPIPSKWGQLSSLKHLDLSSNGLSGSIPTQLFSVPLFNFSDNHLQCDASFDQPCVSKSEHPASTNKSKLAKVVRFASCGAFAILCLGAIFTYRYHQTRRHKSDIFVDVSGEDESKISFGQLRKFSWREIQLATKNFSESNVIGQGGFGKVYKGVLSDNTKVAVKRLTDYHNPGGEAAFEREVLLISVAVHRNLLRLIGFCTTSTERILVYPFMENLSVAYRLRDLKPDEKGLDWPTRKRVAFGTAQGLEYLHEQCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDARMTHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDLSRLEEDEDVLLIDHVTSSVCFTHYVKKLLRENRLEDIVDRNLESYDPKEVETILQVALLCTQGFPEDRPTMSEVVKMLQGVGLADRWADWKQLEEARNQEFSLMTHQFVWSDESTLDQEAIQLSKAR. 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06501 605 Gene3D Ribonuclease Inhibitor 33 206 IPR032675 -
Seca11g06501 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 396 408 IPR008271 GO:0004672|GO:0006468
Seca11g06501 605 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Seca11g06501 605 SUPERFAMILY Protein kinase-like (PK-like) 251 557 IPR011009 -
Seca11g06501 605 Gene3D Transferase(Phosphotransferase) domain 1 350 575 - -
Seca11g06501 605 FunFam Somatic embryogenesis receptor-like kinase 1 350 576 - -
Seca11g06501 605 FunFam Nuclear pore complex protein NUP107 34 185 - -
Seca11g06501 605 Pfam Protein kinase domain 274 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06501 605 ProSiteProfiles Protein kinase domain profile. 273 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06501 605 Gene3D Phosphorylase Kinase; domain 1 242 349 - -
Seca11g06501 605 SMART serkin_6 273 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06501 605 ProSitePatterns Protein kinases ATP-binding region signature. 279 301 IPR017441 GO:0005524
Seca11g06501 605 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 18 566 - -
Seca11g06501 605 SUPERFAMILY L domain-like 37 183 - -
Seca11g06501 605 FunFam Somatic embryogenesis receptor kinase 1 242 349 - -
Seca11g06501 605 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06501 Seca-Chr11 165406533 165412416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06501 12 605 Receptor kinase-like Gene Family AT5G10290 53.451 0.0 648
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Seca11g06501 Pkinase 2.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06501 - - gmx:100800886 1062.37