Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06486 ATGGGCAAAGAGAATGTGTCACCAATGGCAAAGGAAGAAGTCAGTGATGATGGTTCCTCAAGTGTTGAGACTGGGGATTTAGAATCTCACCCTCGACTTAGTCTGGAGAAGGAGACAGGCTTGGCAAGTTGTCGTGTGTGCCAGTGTGCTGAGTCTGATAAAAGGGGAGATGCTGCACTAGAATTTCTGGGCATCACTCCTGTTATAGAGTCTGATGGCAAGGGGGTTCAAAAAGATATGTCTCTTCATAAAAATATTGAAAACAAATCTGGGGTGGTGGAATTTGTAGGCCCTGATGGGGAGGTTTTCATTTGTAAAAATGATTTGGAAATTGGTTTGTCTCATCAAGATGCATTGCTTGAACTTGGTTGTTGTTGTAAAAATGACCTTGCTTTAGTGCATTATGCTTGTGCACTCAAGTGGTTTGTCAACCATGGATCTACCATTTGTGAAATATGTGGACATATAGCGAATAATATCAGAGTATCTGACTTCAATAAGGTTGTTGGTTCTTTGAAGGAGTATGAAGCATTGAGGGAAAGAACTGCCACTGGGGATCCTGGTCCTGCTCAAGCTCATGCAAATAATGGGGTGGATCCTGATGCTGTGGCTGCTATCCGGAGGCAACGACTAAGTGAAATAGCACTATGGTTTTGTCCTCATAACAGCAGTAGCATTACCAACAATAGCAATGTGGATACAGTTTCACAGGTTGTCTCCGAGCAGCCTTTGAATATTGTTCCTGAAGATGCTGGCCCTGAACAGAATCCTGCAACTAAGTGGGCTGTAGAAGGTACTGGGATCCTGCTAGCTACAGGCCTGCTTACCATCACCCTTGCATGGCTTATCGCTCCTCGTGTTGGAAAGAAAACTGCAAAAAGTGGTCTTCATATCCTACTTGGAGGTGTTTGTGCTTTAACAGTGGTGATTTTCTTCCGCTTTTTTGTGCTCACCAGAATCAAATGTTCTGCAACTCTATCAGTGGTGCCAGAATTAGAAGAGAAGCAAGTATTTGATGGGGAGAAGGCTGCTTTACTTGTTAAAGAGCTCAGAAAGAGCTTTGATTCAGGCAAGACAAAGAGCTATGAATGGCGGATTTCCCAATTGGAGGGCATTGCTAAGATGCTAGAAGAGAAAGAGAAGGAAATTACTATAGCTCTTGATAAGGACCTTTCTAAACCTGGACTTGAAGCATTTATAACTGAGATTTCCCAGGCAAAATCTTCGTGTAGTGAAGCAATTCAAGAATTGAAACACTGGATGAAGCCTGAAAAGGTGAATACTTCAATAACAACATTTCCATCATCAGCAGAGATTGTGTCAGAACCACTAGGAGTTGTGTTGGTCATCTCAACATGGAACTTTCCTTTCTTGTTATCAATGGATCCAGTCATTGGAGCCATTTCAGCGGGTAATGCAGTGGTTCTGAAACCATCAGAAATATCTCCAGCAACGTCATCACTGCTTGCAAATTTGCTCGAAAATTATCTAGACAACTCTGCCATAAGAGTTGTTGAAGGGGCTATTCCTGAAACAACTGCACTCCTAGAGCAGAAATGGGATAAGATACTTTACACTGGTAGTGCTAGAGTAGGTCGCATTGTCATGGCTGCTGCTGCGAAGCATCTTACACCAGTGGTCTTGGAACTTGGAGGGAAGTGCCCAGCTGTTGTTGATTCAGATGTCAACTTACAAGTTACTGCTAGGAGGATAATAGGTGGCAAGTGGGCATGCAATAGTGGACAAGCATGCATTTCTGTTGATTATATCATCACAAGAAAAGAATTTGCTCCATCATTGATAAATGCTTTAAAAGAAGAATTGGAGCAATGTTTTGGGAAAGATCTGATGGAATCCAAAGACATGTCACGTATTGTGTCTCCGACCCAATTTGCACGACTTGTGAAGCTCTTGGATGAGGATAAGGTATCTGACAAAATTGTTTTAGGAGGTCAGAGGGATGAGAAGAAATTAAAGATTGCTCCAACTATCCTATTGGATGTTCCAGAAGAAGCTATGGTAATGCAAGAGGAGATATTTGGACCAATACTGCCAATTATCACTGTAGATAACATAGAAGATTGTTTCAGTATAATCAAATCAAAGCCAAAACCTCTCGCTGCATATCTCTTCACAAACAATGAGCAACTGAAGAAGGATTATGTGGAAAAGATATCTTCTGGGGGGATGCTCATCAATGACACTGTCATACATGTTGCAACTCGTGGTTTGCCTTTTGGAGGAGTAGAAGAGAGTGGCATGGGTTCTTACCATGGAAAATTCTCTTTTGATAGTTTCAGCCATAAAAAGTCAGTTCTCTATAGAAGTTTTGATGCAGATTCATCCCTAAGGTACCCTCCATATACACCCAAGAAGGAAAAATTGTTGAAGGCCGTTATCAGTGGCAACATTTTTCAGATAATTTCTGCTTTATTTGGATGGTCTTAA 2448 0.4167 MGKENVSPMAKEEVSDDGSSSVETGDLESHPRLSLEKETGLASCRVCQCAESDKRGDAALEFLGITPVIESDGKGVQKDMSLHKNIENKSGVVEFVGPDGEVFICKNDLEIGLSHQDALLELGCCCKNDLALVHYACALKWFVNHGSTICEICGHIANNIRVSDFNKVVGSLKEYEALRERTATGDPGPAQAHANNGVDPDAVAAIRRQRLSEIALWFCPHNSSSITNNSNVDTVSQVVSEQPLNIVPEDAGPEQNPATKWAVEGTGILLATGLLTITLAWLIAPRVGKKTAKSGLHILLGGVCALTVVIFFRFFVLTRIKCSATLSVVPELEEKQVFDGEKAALLVKELRKSFDSGKTKSYEWRISQLEGIAKMLEEKEKEITIALDKDLSKPGLEAFITEISQAKSSCSEAIQELKHWMKPEKVNTSITTFPSSAEIVSEPLGVVLVISTWNFPFLLSMDPVIGAISAGNAVVLKPSEISPATSSLLANLLENYLDNSAIRVVEGAIPETTALLEQKWDKILYTGSARVGRIVMAAAAKHLTPVVLELGGKCPAVVDSDVNLQVTARRIIGGKWACNSGQACISVDYIITRKEFAPSLINALKEELEQCFGKDLMESKDMSRIVSPTQFARLVKLLDEDKVSDKIVLGGQRDEKKLKIAPTILLDVPEEAMVMQEEIFGPILPIITVDNIEDCFSIIKSKPKPLAAYLFTNNEQLKKDYVEKISSGGMLINDTVIHVATRGLPFGGVEESGMGSYHGKFSFDSFSHKKSVLYRSFDADSSLRYPPYTPKKEKLLKAVISGNIFQIISALFGWS. 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06486 815 ProSiteProfiles Zinc finger RING-CH-type profile. 94 160 IPR011016 GO:0008270
Seca11g06486 815 MobiDBLite consensus disorder prediction 1 34 - -
Seca11g06486 815 FunFam Aldehyde dehydrogenase 351 555 - -
Seca11g06486 815 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 163 IPR013083 -
Seca11g06486 815 SUPERFAMILY ALDH-like 346 788 IPR016161 GO:0016491
Seca11g06486 815 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 552 752 IPR016163 GO:0016620
Seca11g06486 815 Pfam Aldehyde dehydrogenase family 341 772 IPR015590 GO:0016491
Seca11g06486 815 SUPERFAMILY RING/U-box 115 156 - -
Seca11g06486 815 SMART ringv_2 104 154 IPR011016 GO:0008270
Seca11g06486 815 FunFam Aldehyde dehydrogenase 552 752 - -
Seca11g06486 815 Pfam RING-variant domain 117 153 IPR011016 GO:0008270
Seca11g06486 815 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 351 770 IPR016162 GO:0016491
Seca11g06486 815 PANTHER ALDEHYDE DEHYDROGENASE 343 807 IPR012394 GO:0006081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06486 Seca-Chr11 165258404 165269205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06486 301 815 Aldehyde Dehydrogenase Gene Family AT4G34240 67.961 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06486 K00128 - gmx:100800699 867.84