Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06484 ATGCAAGGTGCATTGGAGTTACCACCTGGCTTCAGATTTCACCCCACCGATGATGAGTTGGTGAATCACTACTTGTGTAGGAAGTGTGCTTCCCAGTCAATCGCTGTTTCTATTATCAAAGAACTCGACTTGTACAAGTTTGATCCATGGCAGCTTCCAGAAATGGCTCTTTATGGTGAGAAAGAATGGTACTTTTTCTCTCCAAGGGACCGAAAATATCCAAACGGTTCACGACCGAACCGGGCGGCCGGAACCGGATATTGGAAGGCCACGGGAGCGGATAAACCGATTGGAAAACCGAAGCCACTTGGGATTAAGAAGGCACTTGTGTTCTACGCAGGAAAAGCCCCTAAAGGAGTGAAGACCAATTGGATCATGCATGAGTATCGTCTTGCCAACGTTGATAGATCTGCCTCTAAGAAAAACAATAACTTAAGGCTTGATGATTGGGTGTTGTGTCGAATTTACAACAAGAAAGGGAAAATTGAGAAATACAACAGTGTGGGGATGGTGGATCAGAAAGTAGCAAAGTTTTCTGAGGAATTTCACGAGACTAAGCCTGAGATCAAGATGTACGGCCAGGATGATTTCAGGAATGACCAATTGTATATGGACACGTCAGATTCGGTGCCTAGGTTGCACACGGACTCAAGCTGTTCGGAGCACGTGGTTTCACCGGATGTCACGTGCGAGAAAGAGGTGCAGAGCGAGCCCAAGTGGAATGAACTTGAGCTGGGCCCAGACCCAGTTGCAGGAGGAGCCTTTGATTTTCAGTTGAATTTTATGGACAACAATAACATGAACATGGCAGGTGGAGATGACCTTTTTGCCCCTCAGTTCCAAATGAACCCTTGGCAAGATATGTTCATGTACCTACCCAAGACATTTTGA 891 0.4613 MQGALELPPGFRFHPTDDELVNHYLCRKCASQSIAVSIIKELDLYKFDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPKPLGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSASKKNNNLRLDDWVLCRIYNKKGKIEKYNSVGMVDQKVAKFSEEFHETKPEIKMYGQDDFRNDQLYMDTSDSVPRLHTDSSCSEHVVSPDVTCEKEVQSEPKWNELELGPDPVAGGAFDFQLNFMDNNNMNMAGGDDLFAPQFQMNPWQDMFMYLPKTF. 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06484 296 Gene3D NAC domain 16 163 IPR036093 GO:0003677|GO:0006355
Seca11g06484 296 ProSiteProfiles NAC domain profile. 7 158 IPR003441 GO:0003677|GO:0006355
Seca11g06484 296 FunFam NAC transcription factor 16 162 - -
Seca11g06484 296 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Seca11g06484 296 PANTHER NAC TRANSCRIPTION FACTOR 56 7 205 - -
Seca11g06484 296 SUPERFAMILY NAC domain 3 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06484 Seca-Chr11 165249296 165251582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06484 1 296 NAC Transcription Factor Family AT1G01720 64.000 8.79e-128 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca11g06484 NAM 3.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06484 - - gmx:100170751 497.664