Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06470 ATGGCGAACAAGAAACCACTCAGTCTCAACGACAGCCACTATCGCTTCCTCCAAGACCTTTCCGCTCCTCCCAAACCCAAACCCTCCGCTACTACAGTAGATAACCCTATCCAACGCCGAAGAAGCACCCAACCACAAGACGACGAAACTATTCCCCATTTTTCTGCAATCACTGACTTCGATTCTCCGATCACTATCGGGCAAAACTCGGCGGAGAATCACGAACCAATCAAGTCAGAAGAAGAAGAAGAAGAAGCTCCACCCAAGGAAATTCCCCTGCCTTCGGCTAATTCTTCCCCGAAGGAGGAAAAAAAGACTAAGGTGAAAGTGCAAGGGCGACGCCGCCTCTGTAAGGTTGCGTATGGAGACGCCGGAAAAAATGTGGCCGTTGATGAGCCCAATTTTGATGATATCGTCGAACTTGATGATTCGCCCCTTCCGGCACCGAAAAGTGTGATCCAGATCGAGGAGAGCGGGGGTAGGAGTGAAATTAGGGATATTTTGAATGAACTTAGCTCAAAGTTCGAGTTGCTATCAGTTGAGAGGAAGAGGGTGCCGAAGCCTGTTGAGGGTTCGGTTGGAGTGAAAGAAACTTGTGAAGATGAGGCTTTAGAGTTTGGGAGTGCTGGGTCTTCATTTTCTCCACGACAGGATCCCTGTGACAGCTCGTCAGAGGGTACTAAGAAAGGTGGTGGTGGTGGTATTGAGTATGATTCGGATGATTCCGTTCAAGAGTTGGATCATTTTGAGCCTAAAAATGATGGTTCTATAACTTTGAATGGCCCAAAATCTACATTTAAGTTGCCGGGTAAGATTGGAAAAATGTTGTATCCACATCAGCGGGATGGATTGAAGTGGCTCTGGTCTTTGCATTGTCTGGGTAAAGGTGGAATCTTGGGTGATGACATGGGTTTGGGAAAAACAATGCAGATTTGTGGCTTTCTAGCTGGACTGTTTCATTCACGTTTAATTAGAAGGGCGTTGGTTGTGGCCCCAAAAACCTTATTACCCCATTGGATAAAAGAACTATCAGTTGTTGGTCTCTCTGAGAAGACAAGAGAATACTTTGCAACTTCTACAAAAGTCAGAGAATATGAACTTCAGTACATACTTCAGGACAAGGGTGTTCTTCTGACAACGTATGATATTGTTCGCAATAATTCCAAGTCCTTACGGGGGAATAATTATTTTGACGATGAAGAAAGTGAGGATGGCATTACATGGGACTACATGATTCTAGATGAGGGGCACCTTATAAAGAACCCAAGCACACAGAGAGCTAAAAGTTTGCTCGAGATACCCTGTGCTCACCGCATCGTCATTAGTGGCACGCCATTGCAAAATAATCTCAAGGAGTTGTGGGCATTGTTCAATTTCAGCTGCCCTGAGTTGCTTGGTGACAAGAAATGGTTCAAAGAAAAATTTGAATCACCTATACTTTGTGGAAATGACAAAAATGCTTCTGACAGAGAGAAGCGTATTGGTTCCTCTGTAGCAAAGGAGCTAAGAGATCGTATTCAGCCTTACTTTTTGAGACGTTTAAAGAGTGAGGTTTTCAATCAAGCTGATGACAAAACAACTGCAAAACTTTCTCAGAAACAAGAAATCATTGTGTGGCTTCGATTGACCAGCATTCAGCGGCATCTGTATGAAGCATTTTTGAGGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCACCACTGGCTGCACTTACGATTTTGAAGAAAATATGTGATCATCCACTTCTGTTAACAAAGCGGGCAGCTGAGGATGTATTGGAAGGGATGGACTCAATGCTACAGCCAGATGAAGTTAATGTTGCAGAAAAATTGGCGATGCACATAGCAGATGTTGCAGACACAGACAAGTTTAAAGATGAACATGATGTGTCATGCAAGATTTCCTTCATCATGTCATTATTGGATAATTTGATCCCTGAAGGGCATAGTGTGCTTATCTTTTCTCAGACTCGCAAGATGCTTAATCTTATTCAGTCGAACAGTCAAACATTTGTTCAACTGTTTCTTGAATGCCTAGCATCCAAAGGTTACGACTTCTTACGAATTGATGGCACAACAAAAGCCAGTGACAGATTAAAGATTGTCAATGATTTCCAAGAAGGTGTTGGTGCTTCTATATTTCTCTTGACATCTCAGGTCGGTGGTTTAGGACTGACACTTACAAGAGCAGATCGTGTGATTGTAGTTGATCCTGCTTGGAACCCAAGTACGGATAATCAAAGTGTTGACCGTGCTTATCGTATTGGTCAAAAGAAAGATGTTCTTGTGTATAGACTGATGACATGCGGAACTGTTGAGGAAAAGATCTACAGGAAACAGGTATATAAAGGAGGATTATTCAAAACAGCTACTGAACATAAAGAACAAATTCGGTACTTTAGCCAGCAGGATCTTAAGGAGCTTTTCAGCCTTCCAAAAGAAGGATTTGATGTATCTGTTACCCAACGGCAATTGGATGAGGAGCATGATCGTCAGCATAAAGTGGATGACATTTTCAAAGCACATATAGAGTTCCTGAAAAGGCAGGGTATAGCTGGAGTTAGTCACCACAGTTTACTGTTTTCCAAGACAGACACAGTTCAAGCTGCTCCAAACCTAAAGCTGAATTTGTACAATGGTGGCAGGAATCACAAGACTAAATATATTGGAACTTCAAGATCATCTTCTTCACATGAGCATATTGCTGATGGAGTTGATTTTGCTTTTAATCCTAAGGATGTCAACTTGAGCAAAAAAGGTTCTTCTCCAAGCAGTGCTGGTAAATTGACCGAGTCAGAAATCAAGGATAAAATTAATCGGCTCTCTCAAACACTCTCAAATGCGGCGATGATTTCTAAATTACCTGACAAGGGGGAGAAACTACAGAAACGAATGGCGGAGCTGAATTTAGAGCTCGCTAAATTGAAGATGGAACAAGGAAATGTAGTTGATTTGGATGATTTTACTAGTGAATTTCAAAGAGTGTTGAATGTATAG 2997 0.4231 MANKKPLSLNDSHYRFLQDLSAPPKPKPSATTVDNPIQRRRSTQPQDDETIPHFSAITDFDSPITIGQNSAENHEPIKSEEEEEEAPPKEIPLPSANSSPKEEKKTKVKVQGRRRLCKVAYGDAGKNVAVDEPNFDDIVELDDSPLPAPKSVIQIEESGGRSEIRDILNELSSKFELLSVERKRVPKPVEGSVGVKETCEDEALEFGSAGSSFSPRQDPCDSSSEGTKKGGGGGIEYDSDDSVQELDHFEPKNDGSITLNGPKSTFKLPGKIGKMLYPHQRDGLKWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRALVVAPKTLLPHWIKELSVVGLSEKTREYFATSTKVREYELQYILQDKGVLLTTYDIVRNNSKSLRGNNYFDDEESEDGITWDYMILDEGHLIKNPSTQRAKSLLEIPCAHRIVISGTPLQNNLKELWALFNFSCPELLGDKKWFKEKFESPILCGNDKNASDREKRIGSSVAKELRDRIQPYFLRRLKSEVFNQADDKTTAKLSQKQEIIVWLRLTSIQRHLYEAFLRSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLQPDEVNVAEKLAMHIADVADTDKFKDEHDVSCKISFIMSLLDNLIPEGHSVLIFSQTRKMLNLIQSNSQTFVQLFLECLASKGYDFLRIDGTTKASDRLKIVNDFQEGVGASIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVLVYRLMTCGTVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLKELFSLPKEGFDVSVTQRQLDEEHDRQHKVDDIFKAHIEFLKRQGIAGVSHHSLLFSKTDTVQAAPNLKLNLYNGGRNHKTKYIGTSRSSSSHEHIADGVDFAFNPKDVNLSKKGSSPSSAGKLTESEIKDKINRLSQTLSNAAMISKLPDKGEKLQKRMAELNLELAKLKMEQGNVVDLDDFTSEFQRVLNV. 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06470 998 Gene3D - 536 844 IPR027417 -
Seca11g06470 998 Coils Coil 958 978 - -
Seca11g06470 998 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 529 831 IPR027417 -
Seca11g06470 998 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 288 463 IPR014001 -
Seca11g06470 998 MobiDBLite consensus disorder prediction 206 240 - -
Seca11g06470 998 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 265 513 IPR027417 -
Seca11g06470 998 PANTHER SNF2/RAD54 FAMILY MEMBER 70 977 - -
Seca11g06470 998 Pfam Helicase conserved C-terminal domain 633 756 IPR001650 -
Seca11g06470 998 CDD SF2_C_SNF 625 767 - -
Seca11g06470 998 Pfam SNF2-related domain 291 583 IPR000330 GO:0005524|GO:0140658
Seca11g06470 998 FunFam Protein CHROMATIN REMODELING 24 255 533 - -
Seca11g06470 998 MobiDBLite consensus disorder prediction 1 109 - -
Seca11g06470 998 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 636 806 IPR001650 -
Seca11g06470 998 SMART ultradead3 271 474 IPR014001 -
Seca11g06470 998 MobiDBLite consensus disorder prediction 74 89 - -
Seca11g06470 998 Gene3D - 258 535 IPR038718 -
Seca11g06470 998 SMART helicmild6 673 756 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06470 Seca-Chr11 165123416 165131127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06470 293 809 RAD5 or RAD16-like Gene Family AT5G43530 24.559 2.26e-35 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca11g06470 SNF2_N 1.4e-47 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06470 K20093 - gmx:100779283 1495.33