Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06464 ATGGAAGAGGAGAGTCATAGCAATTTGCCAAATGGGTTCAACACAGGAAGCCCTGAAAGTCCTTGCTTAAAGAACAACACCAACACCACACAGAACAACAATAAAGAACAGGATCGCTTTCTCCCTATAGCCAATGTGGGTAGAATCATGAAAAAAGTGATTCCTGCCAATGGAAAAATATCAAAGGATGCAAAAGAGACAGTTCAAGAATGTGTATCAGAGTTCATCAGTTTTGTGACAGGGGAAGCATCTGACAAATGTCAAAGAGAAAAGAGAAAGACCATCAATGGGGATGATATCATTTGGGCAATCACAACCTTAGGCTTTGAGGATTATGTGGAACCATTAAAATCTTACCTTCAGAAATATAGAGATATAGAAGGAGAGAAGGTTAATGTTCCAAAGCAACAACGTTCTGAACAAAGGCTACATCACCACCATCATAACCAAGATGAAAATAATCAAACATTCAACAATGTATATACCTCAACAAATCTCATATCTCAGCCTCCCTATGTGGCCACAGATCAGCCATATCCATTACCATTTTCCCCAAATTCAATTCAAAAACAACTACGGCCGCAAGACCAGATTGATTCAGTGGGGCATTGGTATGAGTAA 621 0.3929 MEEESHSNLPNGFNTGSPESPCLKNNTNTTQNNNKEQDRFLPIANVGRIMKKVIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVEPLKSYLQKYRDIEGEKVNVPKQQRSEQRLHHHHHNQDENNQTFNNVYTSTNLISQPPYVATDQPYPLPFSPNSIQKQLRPQDQIDSVGHWYE. 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06464 206 MobiDBLite consensus disorder prediction 1 37 - -
Seca11g06464 206 MobiDBLite consensus disorder prediction 7 37 - -
Seca11g06464 206 MobiDBLite consensus disorder prediction 176 206 - -
Seca11g06464 206 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 40 104 IPR003958 -
Seca11g06464 206 SUPERFAMILY Histone-fold 37 153 IPR009072 GO:0046982
Seca11g06464 206 MobiDBLite consensus disorder prediction 134 156 - -
Seca11g06464 206 PRINTS CCAAT-binding transcription factor subunit A signature 68 86 - -
Seca11g06464 206 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Seca11g06464 206 PRINTS CCAAT-binding transcription factor subunit A signature 106 124 - -
Seca11g06464 206 Gene3D Histone, subunit A 27 163 IPR009072 GO:0046982
Seca11g06464 206 ProSitePatterns NF-YB/HAP3 subunit signature. 71 87 IPR003956 GO:0005634|GO:0006355|GO:0043565
Seca11g06464 206 MobiDBLite consensus disorder prediction 180 196 - -
Seca11g06464 206 FunFam Nuclear transcription factor Y subunit B-3 29 155 - -
Seca11g06464 206 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 25 156 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca11g06464 206 MobiDBLite consensus disorder prediction 134 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06464 Seca-Chr11 165065472 165066092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06464 14 204 CCAAT-HAP3 Transcription Factor Family AT2G13570 65.686 1.10e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca11g06464 CBFD_NFYB_HMF 2.8e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06464 K08065 - gmx:100780647 335.109