Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06452 ATGATGGGGAGTGGAAACATGAACCTTCCTCCTGGGTTTTACTTCTCTCCTACAGATGAAGAACTTGTCCTTCATTTTCTCTATTCCAAGGCTTCTTTACCATGCCATCCCAACATTATACCTGATCTTGACTTGTCTCTGCTTGACCCTTGGGAATTCAATGGTAAAGCTTTGTCAAGTGGAAATCAACACTATTTCTTCACTGAGAAGAAGGGAAACAGATCCACAGAAAATGGATATTGGAAGGAAATAGGAGTCACCAAATCAATAGTCTCATCAGATGCTGACAATAAAGTGGGAATCAAGAAGTACCTAGTGTTCAACCTTGGGAAAGCTCCACAAGGGACTGAAACCAATTGGGTAATGGAAGAATATCATATTTGCTCATCTGGGTTTAACACTGCTTCTTGTGGGAGAAGAAGAAATTCTGTAAATCAAAGTTGGAGCAAATGGGTTTTATGCAGAGTATATGAAAAGAGGTCACAATCCCAACAAGGTGCAAAATGTTATAGCGATGAGGATGACAGTGGAACAGAGGTTTCATGGCTAGATGAAGTTTTTATGTCATTAGATGATGATCTTGAAGAAATAAGCCTCCCTAATTAG 606 0.396 MMGSGNMNLPPGFYFSPTDEELVLHFLYSKASLPCHPNIIPDLDLSLLDPWEFNGKALSSGNQHYFFTEKKGNRSTENGYWKEIGVTKSIVSSDADNKVGIKKYLVFNLGKAPQGTETNWVMEEYHICSSGFNTASCGRRRNSVNQSWSKWVLCRVYEKRSQSQQGAKCYSDEDDSGTEVSWLDEVFMSLDDDLEEISLPN. 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06452 201 PANTHER NAC TRANSCRIPTION FACTOR 56 7 171 - -
Seca11g06452 201 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
Seca11g06452 201 SUPERFAMILY NAC domain 4 159 IPR036093 GO:0003677|GO:0006355
Seca11g06452 201 Pfam No apical meristem (NAM) protein 10 127 IPR003441 GO:0003677|GO:0006355
Seca11g06452 201 Gene3D NAC domain 18 164 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06452 Seca-Chr11 164931334 164932405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06452 2 164 NAC Transcription Factor Family AT1G61110 41.243 7.24e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca11g06452 NAM 3.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06452 - - gmx:100779578 305.834