Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06450 ATGAACCAATCTCAAAATACCATTCCCTACTTATTCAGATGCCCCATCAGTTTAGACTTGTTTGAAGATCCTGTAACATTGTGCACTGGCCAAACCTATGACAGGTCAAACATTGAAAAATGGTTGGCTGCTGGTAATCTCACATGCCCTGTCACAATGCAGAAGCTTCATGATCCAACCATTGTTCCCAATCACACTCTTCGCCACTTGATTGATCAGTGGCTTCAACTTGGTCCTCAATTTGAGTCTGGTAATGGTAACTCTGCAACTGCAACTATCCATCATTTATCTGCTCTGAAACACACCCTTGAATCTCATGACAGCAGCTTAGAGAACAAGCTCCAAGCACTTGAGAAAATCACAGCCTTACCTGATCAGTATTGTTCTTTTAACAAATCATTTTTCCTCCAATTGGATTTCTTATCACTACTTTTGGAACTAGTTTTTGGAAGATCAGAAGCTCAAGTATCAAAGGATCAAATGCACTTCATAGAGCTAGCAATTTGTTGCATCCTAAAATTGCTACCTCTTGGTAATTTGGAGCCTCTAAATATGATCAAAGATGAGTCCAAATTAGCAACATTTCTGCTATTATTTGAAAAAGGTACTACCTTGGTTAAGACTAGTTTGTGTCATCTTATAGAGTCAACATCATCATCTCAGACAGAAGAGTTATGTTCTATTCTTGGAAACTCTCACAAACTAGTGCATGAGATTGTTCTAGCTGTTTACCAAAACAACAAGGTTTCTGAGGATGTAATTAGAGGCATGTCAGCACTTTGTTCCTTGCAATCCAACAGAGAGAATTTAGTGAGAGGAGGAGCAATAGATGGGATCATGACATACATTTCTGAGAGAAGACAGAAGAACATGGCACCAGTGGCAATGGGAATAGTAGAGAAACTTTTGGAGGTAGAAAGTGCTAAAGAGGAATTGGTGAACTACCCAAATGGTATTAAAATTTTGGTCAACATGGTTTTCAAGGTGTCTGATCAAGAATGCAGTGATAGTGCTGTTGGGATACTTTTAATTATTTGCCATGATTTTGAGGGTGCAAGAGAGGAAGCCATTGAGTATGGAGTTTTGACTCGGTTGCTATTGCTTCTGCAGAGTCAGTGTGGTGCCACAACAAAATCAAAGGCAAGAATGCTGCTCAAATTGTTAAGATCCAAGATGGACTAA 1182 0.3926 MNQSQNTIPYLFRCPISLDLFEDPVTLCTGQTYDRSNIEKWLAAGNLTCPVTMQKLHDPTIVPNHTLRHLIDQWLQLGPQFESGNGNSATATIHHLSALKHTLESHDSSLENKLQALEKITALPDQYCSFNKSFFLQLDFLSLLLELVFGRSEAQVSKDQMHFIELAICCILKLLPLGNLEPLNMIKDESKLATFLLLFEKGTTLVKTSLCHLIESTSSSQTEELCSILGNSHKLVHEIVLAVYQNNKVSEDVIRGMSALCSLQSNRENLVRGGAIDGIMTYISERRQKNMAPVAMGIVEKLLEVESAKEELVNYPNGIKILVNMVFKVSDQECSDSAVGILLIICHDFEGAREEAIEYGVLTRLLLLLQSQCGATTKSKARMLLKLLRSKMD. 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06450 393 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
Seca11g06450 393 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
Seca11g06450 393 SUPERFAMILY RING/U-box 5 76 - -
Seca11g06450 393 Gene3D - 209 391 IPR011989 -
Seca11g06450 393 PANTHER WDSAM1 PROTEIN 6 391 IPR045185 GO:0061630
Seca11g06450 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Seca11g06450 393 CDD RING-Ubox_PUB 9 56 IPR045210 -
Seca11g06450 393 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Seca11g06450 393 FunFam RING-type E3 ubiquitin transferase 8 79 - -
Seca11g06450 393 SUPERFAMILY ARM repeat 96 381 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06450 Seca-Chr11 164905467 164906648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06450 8 373 U-box Gene Family AT3G19380 30.287 1.49e-41 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06450 - - gmx:100805322 532.717