Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06448 ATGAAATCTCCTATTACGATAAGGAAAGGTGATAAGAAGAAGAAGAAGAAGCCGAAGAGTTTCGATGAGCTCTTCTCTCGAAATTCACCGAGAAGCAGCAGGGATTTCGATGGCGGCGCCGCCAGTGAGAAGAAAGGGCTTCCGTTGCCTCTCCCCACCACACAGTTCGATCAGACCGTCGGATCTCCTTCCGTCTCTGGCTCCAGCGTCAGCTCCTCTGCCTCCTATGATGATCATCCAATCTCTCCTCAATTCAATGCCAACAACAGAGGACAAGATGAGGTGAAGCTCAAAAATGTGAGGTCAAGAAGCCCAGGTCCTGCGTCAAGAGGACCCACCAGCCCTACATCACCTCTTCATCCAAGGTTGAATGTTTTGAGTCTTGACTCTCCTACAGGAAAGCAAGAGGATGGAAGGAGTCAATGCCATCCATTGCCTCTTCCACCAGGCTCTCCTACTAGTCCTTCTGCTCTCTCCAACACACGGGCAAATGGACTGTTAGAAACCACTACCAGTAACCTGTCCAAGTGGAAGAAAGGAAAGCTTTTAGGCCGGGGAACATTTGGGCATGTTTATCTGGGATTCAATAGTGAAAATGGACAAATGTGTGCAATAAAAGAAGTCAGGGTTGTCTCTGATGATCAAACATCAAAAGAATGCCTCAAACAACTGAACCAGGAGATAAATTTGCTTAGTCAGCTTTCACACCCAAACATTGTTCAATACTATGGGAGTGAACCGGAAGAAGAATCACTTTCTGTTTATTTGGAATATGTCTCTGGTGGTTCTATCCATAAATTACTTCAGGAATATGGTCCATTCAAGGAGCCTGTTATTCAAAACTATACTAGGCAGATCGTCTCCGGGCTTGCCTATCTACATGGAAGAAATACAGTACACAGGGATATCAAAGGGGCTAACATACTAGTTGACCCTAATGGTGAAATCAAACTAGCAGACTTTGGAATGGCTAAACATATAAATTCTTCTGCCTCGATGCTTTCATTCAAAGGAAGTCCGTATTGGATGGCACCTGAGGTTGTAATGAATACAAATGGCTATAGTCTTCCAGTTGATATATGGAGCTTGGGGTGCACAATTCTTGAAATGGCAATGTCGAAGCCTCCATGGAGTCAGTATGAAGGGGTAGCTGCCATATTTAAAATTGGGAACAGCAAAGATATGCCTGAAATCCCTGAGCACCTTTCAATTGATGCAAAGAATTTCATTAAGCTATGTTTACAACGGGACCCATCAGCTCGCCCAACAGCCCATAAGTTACTAGACCACCCCTTCATTCGAGATCAATCAGCGACAAAAGCTGCAAATGTAAGCATAACAAGAGATGCTTTCCCTTACATGTTTGATGGAAGTCGAACGCCGTTGATTGCGATGGATTCGAGTTCGGGGCAGCAAGAGTTTGATTATTTGTTCAAGATGTTGATGATTGGGGATTCTGGGGTTGGCAAGAGTAGTCTTCTTCTCAGTTTCACCACCGATGATTTTCAAGATCTCTCCCCCACAATTGGTGTTGATTTTAAGGTCAAATATGTGATGATGGGGGGTAAAAAGCTGAAGCTTGCCATTTGGGATACTGCTGGTCAGGAGAGATTCCGAACACTGACAAGTTCTTACTACCGAGGGGCCCAAGGAATCATCATGGTTTATGATGTAACAAGGCGAGAAACATTTACGAATCTTTCTGAAATATGGTCAAAGGAAATAGACCTTTATTCAACAAATCAAGACTGCATCAAGATGCTTGTTGGAAACAAAGTAGATAAGGAGGGTGATAGAGTTGTGACAAAAAAGGAGGGAATAGACTTTGCCAGGGAATATGGTTGTCTATTTATTGAATGCAGTGCTAAAACTCGAGTTAATGTACAACAATGCTTTGAAGAGCTTGTTTTGAAGATTCTGGATACACCTAGCCTCTTAGCCGAAGGTACTAAGGGGGTAAAAAAGAACATTTTTAAGGACAAGCCACAATCTGATGCAGCCACAAGTAGTTGCTGCTGA 2019 0.4349 MKSPITIRKGDKKKKKKPKSFDELFSRNSPRSSRDFDGGAASEKKGLPLPLPTTQFDQTVGSPSVSGSSVSSSASYDDHPISPQFNANNRGQDEVKLKNVRSRSPGPASRGPTSPTSPLHPRLNVLSLDSPTGKQEDGRSQCHPLPLPPGSPTSPSALSNTRANGLLETTTSNLSKWKKGKLLGRGTFGHVYLGFNSENGQMCAIKEVRVVSDDQTSKECLKQLNQEINLLSQLSHPNIVQYYGSEPEEESLSVYLEYVSGGSIHKLLQEYGPFKEPVIQNYTRQIVSGLAYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSASMLSFKGSPYWMAPEVVMNTNGYSLPVDIWSLGCTILEMAMSKPPWSQYEGVAAIFKIGNSKDMPEIPEHLSIDAKNFIKLCLQRDPSARPTAHKLLDHPFIRDQSATKAANVSITRDAFPYMFDGSRTPLIAMDSSSGQQEFDYLFKMLMIGDSGVGKSSLLLSFTTDDFQDLSPTIGVDFKVKYVMMGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEIWSKEIDLYSTNQDCIKMLVGNKVDKEGDRVVTKKEGIDFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGTKGVKKNIFKDKPQSDAATSSCC. 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06448 672 Gene3D Transferase(Phosphotransferase) domain 1 174 453 - -
Seca11g06448 672 ProSiteProfiles small GTPase Rho family profile. 471 640 - -
Seca11g06448 672 SMART rab_sub_5 478 642 - -
Seca11g06448 672 CDD Rab18 478 639 - -
Seca11g06448 672 Gene3D - 471 672 IPR027417 -
Seca11g06448 672 MobiDBLite consensus disorder prediction 1 161 - -
Seca11g06448 672 SMART ras_sub_4 475 642 - -
Seca11g06448 672 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 56 441 - -
Seca11g06448 672 SMART serkin_6 177 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06448 672 MobiDBLite consensus disorder prediction 16 30 - -
Seca11g06448 672 MobiDBLite consensus disorder prediction 52 93 - -
Seca11g06448 672 ProSiteProfiles small GTPase Rab1 family profile. 473 672 - -
Seca11g06448 672 SMART rho_sub_3 480 642 IPR001806 GO:0003924|GO:0005525
Seca11g06448 672 SMART ran_sub_2 483 668 - -
Seca11g06448 672 ProSitePatterns Protein kinases ATP-binding region signature. 183 206 IPR017441 GO:0005524
Seca11g06448 672 PRINTS Transforming protein P21 ras signature 500 516 - -
Seca11g06448 672 PRINTS Transforming protein P21 ras signature 478 499 - -
Seca11g06448 672 PRINTS Transforming protein P21 ras signature 617 639 - -
Seca11g06448 672 PRINTS Transforming protein P21 ras signature 518 540 - -
Seca11g06448 672 PRINTS Transforming protein P21 ras signature 582 595 - -
Seca11g06448 672 CDD STKc_MEKK1_plant 176 433 - -
Seca11g06448 672 Pfam Protein kinase domain 178 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06448 672 NCBIfam small GTP-binding protein domain 477 634 IPR005225 GO:0005525
Seca11g06448 672 SMART arf_sub_2 465 643 - -
Seca11g06448 672 MobiDBLite consensus disorder prediction 106 137 - -
Seca11g06448 672 ProSiteProfiles small GTPase Ras family profile. 470 672 IPR001806 GO:0003924|GO:0005525
Seca11g06448 672 ProSiteProfiles Protein kinase domain profile. 177 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06448 672 FunFam Ras-related protein RABC1 471 672 - -
Seca11g06448 672 FunFam Mitogen-activated protein kinase kinase kinase 175 457 - -
Seca11g06448 672 SUPERFAMILY Protein kinase-like (PK-like) 166 456 IPR011009 -
Seca11g06448 672 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 473 645 IPR027417 -
Seca11g06448 672 Pfam Ras family 479 640 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06448 Seca-Chr11 164883395 164894939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06448 29 458 MAP Kinase Kinase Kinase AT1G53570 65.132 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca11g06448 Pkinase 1.2e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06448 K04421 - gmx:100787064 698.738