Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06445 ATGGCCAAAACGAGATTGATTCCGGGATTTCGGTTCCATCCCACTGACGTTGAGTTGGTTATGTACTTTCTAAAGAGGAAAGTGATGGGGAAAAAGTTAATTGATAATGTCATTGCTGAACTTGACATTTACCAGTATGCTCCTTGGGATCTACCAGATAAATCTTGTCTGAGAAATGGGGATTTGGAATGGTACTTCTTGTGCCCGATAAAGAAGAAATATGGCAGTGGAGCTAGGATGAATCGAGCTACAGAAATTGGGTATTGGAAAATTACTGGGAAGGATAGATCTGTTCAACACAATAATCATACTGTGGGGATGATCAAATCCCTGATATTTCACACCGGCAAAGCACCTCTTGGGGAACGAACGGATTGGGTTATGTATGAGTACAGGCTTGACGATAAGGACCTGACTGACAAAGGAATTGCTCAGGATTCCTATGTAATCTGTAAGGTATTTCAAAAGAAAGGTCGTGGTCCCATGAATGGTGCACAATATGGTAGACCTTTTAATGAGGAAGACTGGAATGATGAAGAAGCAGGGATACCTTTTGCTGATTCATCTGCTGCACCAGTTCCCATTTTGCCTATGGCATCTAATTGTCCCCTTCCAAATGACCAGCACCTGCCTCCTAGTGGATGTATTGGGTCAACATCCACATCATGTCTATCAGGATTGATTCCTTCTCCTGGCCCTTCTCCTGGTCCAGAAATTCCTTCACATCCAAGCAATCAAACTGTTAACAATGATGATGATATTTTATCAATGCTTGACATTTTCAAAGAAGACATGCCTGAGGAAAATGTTGCTGAAGGTGCACCTTCAAATGATTTTTTTGAGGACTTGGGAGACCTGGATTACTGGGCTGCGTTCGGTGGTTTCTCCTCTGGCCAGAATGCTGAAGTTAGCACAAATGGAATGGCTACGCTGGGTGATGTAGGGTGGTTTGGCGACTTGGAGTTCATGGAGTTGATTGACCTAGACTCTCCATTGTTCTGA 1002 0.4321 MAKTRLIPGFRFHPTDVELVMYFLKRKVMGKKLIDNVIAELDIYQYAPWDLPDKSCLRNGDLEWYFLCPIKKKYGSGARMNRATEIGYWKITGKDRSVQHNNHTVGMIKSLIFHTGKAPLGERTDWVMYEYRLDDKDLTDKGIAQDSYVICKVFQKKGRGPMNGAQYGRPFNEEDWNDEEAGIPFADSSAAPVPILPMASNCPLPNDQHLPPSGCIGSTSTSCLSGLIPSPGPSPGPEIPSHPSNQTVNNDDDILSMLDIFKEDMPEENVAEGAPSNDFFEDLGDLDYWAAFGGFSSGQNAEVSTNGMATLGDVGWFGDLEFMELIDLDSPLF. 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06445 333 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Seca11g06445 333 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Seca11g06445 333 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Seca11g06445 333 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 188 - -
Seca11g06445 333 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06445 Seca-Chr11 164836175 164839499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06445 1 264 NAC Transcription Factor Family AT5G09330 52.313 9.12e-93 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca11g06445 NAM 6.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06445 - - gmx:100778933 409.068