Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06438 ATGGACAATAACAACACTACTACCACTTGGAATCTGGATCAAACAAATGTTGTTCTCCAAGTCCAAGATCATCACCACCAAATCCCTATGGATTCTGGAATTTGGCCTAACATAGCAACACCTTCCTCTTCTTCAGGAATATCCCTCTGCAGTGACGGAATATTCCACATGGAATTAGAAGAAGCTGAAGAAGAAGAAGAAGAAGAGGAGCTAGGTCCCATGAAGGAGATGATGTACAAGATTGCAGTGATGCAGCCAGTGGACATAGACCCAGCCACCATCAGGAAACCAAAGAGAAGAAACGTTAGAATCAGTGATGACCCTCAGAGTGTGGCTGCAAGGCATAGGAGAGAGAGGATCAGTGAGAAAATGCGCATCCTTCAAAGACTCGTACCTGGTGGAACCAAAATGGACACTGCTTCTATGCTTGATGAAGCCATTCTCTATGTCAAGTTCTTGAAGAGACAAATCAGGTTGCTTCAATCAACTCCTCCTACAATTACTCCTTTATTAGCCCCTTCTTGTGATTGGCCTTTTTCACCAAATGTATCTATACTCACTTCCACAACCGCCATGGTCATGGACTTGCTGCCGGAGGACATGGCCAGCCTTGTGATGCCTCCTCCACCTTGTGAGAGGTAA 642 0.4517 MDNNNTTTTWNLDQTNVVLQVQDHHHQIPMDSGIWPNIATPSSSSGISLCSDGIFHMELEEAEEEEEEEELGPMKEMMYKIAVMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKMRILQRLVPGGTKMDTASMLDEAILYVKFLKRQIRLLQSTPPTITPLLAPSCDWPFSPNVSILTSTTAMVMDLLPEDMASLVMPPPPCER. 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06438 213 Gene3D - 107 166 IPR036638 GO:0046983
Seca11g06438 213 SMART finulus 110 159 IPR011598 GO:0046983
Seca11g06438 213 Pfam Helix-loop-helix DNA-binding domain 114 153 IPR011598 GO:0046983
Seca11g06438 213 FunFam BHLH transcription factor 107 168 - -
Seca11g06438 213 CDD bHLH_AtIND_like 105 162 - -
Seca11g06438 213 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 104 153 IPR011598 GO:0046983
Seca11g06438 213 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 19 180 IPR045843 GO:0003700|GO:0006355
Seca11g06438 213 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 109 163 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06438 Seca-Chr11 164752691 164753377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06438 74 174 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 74.257 7.35e-47 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca11g06438 HLH 2.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06438 - - gmx:100775296 221.861