Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06437 ATGGAATTCTCATCCAAGGAACCATTTCCTGGAGGCAGAGGTTCAAATAATGATGATGTTACGAATAAAGACTACAGAGTTTTGGATGCAACAGTTGCATGGGAAACTGATGGAAGTTGCAGCAGGTCAGTCAGGAGTAGCAGGAGCCGGAGCCCTCCACATGGTTTTATGTGGGATTTAGGAGTCAATGACAAAAATAAAGCAAGTGCTGGACGATTTACACAACCATGTAGAAATTTTGCTGCTGGGAAATGCAGAAGTGGCAGCCATTGTCATTTCCTTCACCTTGGTAATCAAAATTTTGAGGATAGTTGGGAAAGTAGACACAGACAAGATGGAGCTCCTAGATATTCTGCTGTCCATGAGAGTGGGGACTATTCTCTTACAAGTGGAAGATCTGATGAAGCTTGTATTAATTTTTTGAAAGGAAGATGTAGAATGGGAGCATCATGCAAGTATGTGCATCATGATAATTCTGATGGGTTTGGTAAAGTTTCTGCAGATGAATCATCTAGGGATTGGGTAATTAATAGAAGACACATGGAGAATTCTTTCGAGCAGGGTGGTTGGCATTATCCAAACCACATTGGTGATACTCCTTGCAAATTTTTTGCTTCTGGGAATTGTCGTAATGGTAAACATTGTAGGTTTTCTCATGATAGACAAGCATGTAGGAGCCCTAATAGAAGATTAAGTGATGATACGACAAGGATTAATCAAGGTGGAGATCAGGTATTGGATAGACCAAAATTGAGTGATTCTGATACTCCTAATGGAAGGATAAGAGATGATAGATGGTGTTCAGATGGCAGTATGGCTGCTGTAGATAAAGTTTGGGATGGTCCAAACAAGAATCATTTAGTTGCTGTCTTTGATACTGCAAAACTGGTTGAGGACAACAAAAATGGAGTTATGAGCTTCACTGCTTGGCCAATGAGTGATGGGTGGGGCCGTAACTTAGACAAGAACAGAGTGCATGGTGAGTCGCCATTTTCAAGTTATAAGAAGGAAGCCAACTGTTGGACAGCAGAAAATGCAATTGACAACATTCGCATTTCCCAATCAGTAGATAGAAGCATTTGGCCTGGTGATGAAAAAATGTCTCCTGATTGGAATTATGGTGAGCGATCTTCCAGCCGTATTAAAGAAGAGCACAGGCAGAATAAGCAACAAGTTTCTCCAGGACAAGGATATAATCATGCTGCTCGAAATGTAAATGCTTTGCATTCTTCAAGCTATCATGGTGTTGTACAGAGTCATGTGTTGCGTGCAATTGCTCTTCCAAGACTAAGAAATGAAGGTATGCAGACCCAGGAAGTCTCTACTGAGAAAAGGTATACTGTTGAGTCAATTGCAAGCCTATCACAAGTTGGTTCAAGAAATTATCCAACTCACAACATGGTTAGCAAAGAACAGCTTGCTCAACTTACCTGCCTCTCAGCTTCTCTGGCACATTTCCTTGGAGCAGGTAGGCAGCTCCTGCAACTTAATGCTTCTTCAAGCCCTCATGATACAAAGGGCTTACCCTCTGTTGACCAAACTGAAGGGTCTGGTGATCCAATGTCTGATAGTATGGAGACAAGTGGGGTCCCCCAAACCTTTTCACCTATTGAAAATGTTCCAAACGATGCAGTAGAAATTCCATCACTGTTATCTAACTCGGGACAAAATTTTGATGATTTTTGTAAGACAGCATTTTCATCAAAACTTGTCAAGAGTGAAAATGAAATGGCCGCTGAAGAGAATGATCCTTTGGAAGACATGGACAAAAGTGGTGGACCTGATGAGGCCAACAAAATAAAGGATGTGAAGGGGATTCGTGCATTTAAATTTTCATTAGTGGAGTACATTAAGGAGCTTCTGAAACCAACATGGAAAGAAGGTCAAATCACCAAAGAAGATTATAAAGCAATTGTGAAGAAAGTTACTGATAAAGTAACTGGTTCAGTGCAGCGGGAACATATTCCTCAGACACAAGACAAAATTGACCGCTATTTATCATTTTCGAAACCAAAGCTTAACAAACTTGTACAGGTCAGTGGTGGCTCTCTCACAGATTTCCGTCATGTGTATGGTGGATTCAAACTTTTGTCACCCATTTAA 2103 0.4089 MEFSSKEPFPGGRGSNNDDVTNKDYRVLDATVAWETDGSCSRSVRSSRSRSPPHGFMWDLGVNDKNKASAGRFTQPCRNFAAGKCRSGSHCHFLHLGNQNFEDSWESRHRQDGAPRYSAVHESGDYSLTSGRSDEACINFLKGRCRMGASCKYVHHDNSDGFGKVSADESSRDWVINRRHMENSFEQGGWHYPNHIGDTPCKFFASGNCRNGKHCRFSHDRQACRSPNRRLSDDTTRINQGGDQVLDRPKLSDSDTPNGRIRDDRWCSDGSMAAVDKVWDGPNKNHLVAVFDTAKLVEDNKNGVMSFTAWPMSDGWGRNLDKNRVHGESPFSSYKKEANCWTAENAIDNIRISQSVDRSIWPGDEKMSPDWNYGERSSSRIKEEHRQNKQQVSPGQGYNHAARNVNALHSSSYHGVVQSHVLRAIALPRLRNEGMQTQEVSTEKRYTVESIASLSQVGSRNYPTHNMVSKEQLAQLTCLSASLAHFLGAGRQLLQLNASSSPHDTKGLPSVDQTEGSGDPMSDSMETSGVPQTFSPIENVPNDAVEIPSLLSNSGQNFDDFCKTAFSSKLVKSENEMAAEENDPLEDMDKSGGPDEANKIKDVKGIRAFKFSLVEYIKELLKPTWKEGQITKEDYKAIVKKVTDKVTGSVQREHIPQTQDKIDRYLSFSKPKLNKLVQVSGGSLTDFRHVYGGFKLLSPI. 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06437 700 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 5 678 - -
Seca11g06437 700 MobiDBLite consensus disorder prediction 1 22 - -
Seca11g06437 700 ProSiteProfiles Zinc finger C3H1-type profile. 200 222 IPR000571 GO:0046872
Seca11g06437 700 MobiDBLite consensus disorder prediction 499 539 - -
Seca11g06437 700 ProSiteProfiles Zinc finger C3H1-type profile. 71 98 IPR000571 GO:0046872
Seca11g06437 700 MobiDBLite consensus disorder prediction 574 597 - -
Seca11g06437 700 Gene3D - 194 269 - -
Seca11g06437 700 ProSiteProfiles Zinc finger C3H1-type profile. 131 158 IPR000571 GO:0046872
Seca11g06437 700 Pfam RNA-binding, Nab2-type zinc finger 136 155 - -
Seca11g06437 700 Pfam RNA-binding, Nab2-type zinc finger 76 95 - -
Seca11g06437 700 MobiDBLite consensus disorder prediction 225 264 - -
Seca11g06437 700 MobiDBLite consensus disorder prediction 361 397 - -
Seca11g06437 700 MobiDBLite consensus disorder prediction 248 264 - -
Seca11g06437 700 SMART c3hfinal6 72 97 IPR000571 GO:0046872
Seca11g06437 700 SMART c3hfinal6 131 157 IPR000571 GO:0046872
Seca11g06437 700 SMART c3hfinal6 195 221 IPR000571 GO:0046872
Seca11g06437 700 Gene3D - 67 166 - -
Seca11g06437 700 SUPERFAMILY CCCH zinc finger 198 220 IPR036855 GO:0046872
Seca11g06437 700 Pfam CCCH-type zinc finger 200 220 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06437 Seca-Chr11 164727157 164732489 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca11g06437 zf-CCCH_4 5.1e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06437 - K22909 gmx:100783856 785.408