Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06430 ATGCTGAGCTCTGATGATGGAGATATTGATGTATTCTTTGACTCAGTGGATAGTTTGTCAGCTCAAGATTCTGTTTTAGCTAAAGAAGAGTTTGGTTATGGAGGGTGTGGCTGTGATTATGATGAGATTTGGGTGAAGGAGCCTGTTAGTGTGAAGGAGAGACGGGAACGTTTCCTGCAGGGTATGGGTTTAGCTGATACTTCTTCTAAGGTTTGTTCACAGGAGAAAATGATGAGCTTTGATGACTCATCCATCAGCTTGGGACTTGAGAGGATCACGGAATGCAGTGGAGCAGTCTCAAATGCTTGCATTTCGCATACGGATCAAGTATCTGACAAGTTGGTTCTCTCTGGAAGGAAAGCAGCTTCTGAAGCAGAAGTTTTGTTCGATGAAGCAGATGCGAGTTTTCAAGGGAAAGTGAATGAGCTCTCTTCTACAACACAGGAGCACAGACACAGAGAAGCTGAGGCTCAAGAAGAATTTCAGGATTTTGACATACGTAAACATAAAAGGAAAAATTGGTGGAAGCACTTTGTAAACGTCAGGAAAGGTGATGAAGGAAAAGCCAGATCAAAATTGAATACAGGGACAAATAAAACTCGTAGGATAAAGGTAAGGCAGAATAAAAAGAGGTGGCTGGAGTTCAGTGGGCTATACATTGGACAAGAGATTAGAGCACACAAAGGCCTAATTTGGACTATGAAATTTAGTCCCAATGGTAAGTATGTAGCTAGTGGAGGTGAAGATGGTGTTGTGCGCGTATGGCGTGTTACATCACTGGATACATCCAGTATTTGTTTCACCACAGAAGGCAGTGCAGCTAGTAGAAAAGTGAAACTTGGCAACTCTTTTCATTGGAAGAAACACTCGAGCCAACCCTTCATTTTCCTCCCAAATAGTATTTTTCAAATTGAAGAATCACCACTGCAAGAATTCTTTGGTCATTCCAGTGATGTCTTGGATTTGGCTTGGTCTAATTCAGATATTCTCCTCTCATCTTCTATGGATAAAACTGTTCGCTTGTGGCAAATTGATTGTAATCAAAGTCTACATGTTTTCCATCACAATGACTATGTGACATGCATTCAGTTCAACCCTGTTGATGAAAATTACTTCATCAGTGGGTCAATTGATGGTAAAGTTCGAATTTGGGGGATACATGAAGAGCGAGTTATTGACTGGGCAGATATACGAGATGTCATAAGTGCTATAAGTTACCAGCAAGATGGGAAAGGTTTTGTAGTTGGTTCTGTTACTGGCACTTGTCATTTTTATGTTGCTTCAGGAAAATATTTCCAGCTTGAGGCGCAGATAGATGTCCATGGAAAGAAGAAAGCATCAGGCAACAAGATTACTGGCATTCAGTTCTCCCAGAAAAACTGTCAGAAAATTATGATCACATCAGAAGATTCCAAAATTCGCATATTGGATGGCATTGAGCTTGTTCAGAAATACAGAGGCCTTCCTAAGTCTGGAAGCCAGATGTCTGCTTCATTTACATCAAGTGGAAAACATATAATTTCAGTTGGAGAGGACTCACGTGTGTATATTTGGAACCACAATGACTTGACAAATGCCTCTTCCAAACAAACAAAATCTGAGTGTTCCTGTGAGTACTTTTTCTCCAAGGGTGTTACTGTTGCAATACCTTGGTCAGGTATGAAAACAGATCAAAGGGAATCTAGCAATAAATTTTCCCACTTTTCTTCAGAAACACAAACCCCAGAAGCAGTTGTTCCCGAGGTTAGAGATTCAGAACGTTTTTCTCTTGGTAATTGGTTCTCCATTGATGGTACAAACCGAGGTTCTATGACATGGCCTGAGGAGAAACTTCCTAGCTGGGATTTACCTCTTGTAGAAAATGAATATGATCACCAGAAGTTATGTCACAGAGATACTAGCCATGAAAGAAGTGTATCAGAAACATGGGGACTATCAATTGTGGTAGCTGGTCATGATGGAACTATCAAGACATTCCACAACTTTGGATTGCCCATTAGGCTTTAG 2007 0.4071 MLSSDDGDIDVFFDSVDSLSAQDSVLAKEEFGYGGCGCDYDEIWVKEPVSVKERRERFLQGMGLADTSSKVCSQEKMMSFDDSSISLGLERITECSGAVSNACISHTDQVSDKLVLSGRKAASEAEVLFDEADASFQGKVNELSSTTQEHRHREAEAQEEFQDFDIRKHKRKNWWKHFVNVRKGDEGKARSKLNTGTNKTRRIKVRQNKKRWLEFSGLYIGQEIRAHKGLIWTMKFSPNGKYVASGGEDGVVRVWRVTSLDTSSICFTTEGSAASRKVKLGNSFHWKKHSSQPFIFLPNSIFQIEESPLQEFFGHSSDVLDLAWSNSDILLSSSMDKTVRLWQIDCNQSLHVFHHNDYVTCIQFNPVDENYFISGSIDGKVRIWGIHEERVIDWADIRDVISAISYQQDGKGFVVGSVTGTCHFYVASGKYFQLEAQIDVHGKKKASGNKITGIQFSQKNCQKIMITSEDSKIRILDGIELVQKYRGLPKSGSQMSASFTSSGKHIISVGEDSRVYIWNHNDLTNASSKQTKSECSCEYFFSKGVTVAIPWSGMKTDQRESSNKFSHFSSETQTPEAVVPEVRDSERFSLGNWFSIDGTNRGSMTWPEEKLPSWDLPLVENEYDHQKLCHRDTSHERSVSETWGLSIVVAGHDGTIKTFHNFGLPIRL. 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06430 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 352 IPR001680 GO:0005515
Seca11g06430 668 SUPERFAMILY WD40 repeat-like 219 658 IPR036322 GO:0005515
Seca11g06430 668 Gene3D - 124 392 IPR015943 GO:0005515
Seca11g06430 668 PANTHER WD REPEAT DOMAIN 44 7 665 IPR040324 -
Seca11g06430 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 352 394 IPR001680 GO:0005515
Seca11g06430 668 SMART WD40_4 437 477 IPR001680 GO:0005515
Seca11g06430 668 SMART WD40_4 478 519 IPR001680 GO:0005515
Seca11g06430 668 SMART WD40_4 217 256 IPR001680 GO:0005515
Seca11g06430 668 SMART WD40_4 305 343 IPR001680 GO:0005515
Seca11g06430 668 SMART WD40_4 387 426 IPR001680 GO:0005515
Seca11g06430 668 SMART WD40_4 346 385 IPR001680 GO:0005515
Seca11g06430 668 PRINTS G protein beta WD-40 repeat signature 243 257 IPR020472 -
Seca11g06430 668 PRINTS G protein beta WD-40 repeat signature 372 386 IPR020472 -
Seca11g06430 668 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Seca11g06430 668 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 312 345 - -
Seca11g06430 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 224 265 IPR001680 GO:0005515
Seca11g06430 668 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 352 384 - -
Seca11g06430 668 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 224 259 - -
Seca11g06430 668 FunFam WD repeat-containing protein 44 208 551 - -
Seca11g06430 668 Gene3D - 393 548 IPR015943 GO:0005515
Seca11g06430 668 Pfam WD domain, G-beta repeat 348 384 IPR001680 GO:0005515
Seca11g06430 668 Pfam WD domain, G-beta repeat 223 255 IPR001680 GO:0005515
Seca11g06430 668 Pfam WD domain, G-beta repeat 307 342 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06430 Seca-Chr11 164654527 164659732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06430 309 516 U-box Gene Family AT2G33340 25.909 6.12e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06430 K20241 - gmx:100819135 1085.09