Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06425 ATGAGTTTGGCGGGTACTGAAAGCTCAGAAGAGGGTGCAGGGCATTCGGAGCCTCCCGATCCTGATGTTCTTGAAATTGATCCTACTTGTCGCTACATCAAGTATAAAGAAGTGATCGGCAAAGGAGCCTTCAAAACTGTTTACAAGGCATTTGATGAAGTCAATGGAATTGAAGTTGCATGGAGCCAGGTTCAGATTGATGAAGTATTACAGTCACCAGGTGACTTAGAGAGGCTATACTCGGAAGTGCATCTCTTGAAATCACTGAGGCACAATAACATAGTAAGATTCTACAACTCCTGGATTGATGAGAAGCACAAAACTGTTAATATGATTACTGAGTTGTTTACCTCGGGAAGCCTCAAAAAGTATCGTAAAAGACACAAGAAGGTTGACATGAAGGCCATTAAAGGATGGGCAAGACAAATTTTAATGGGTTTAATCTATCTTCACAGCCACAACCCACCAGTTATACACAGGGACCTGAAATGCGATAATATATTTATCAATGGCCACCAAGGAGAAGTTAAAATTGGAGATTTGGGGCTGGCTACTTTCTTGGAGCGGACCAATGCCAAGAGTGTAATTGGAACCCCGGAGTTTATGGCGCCTGAGCTGTATGATGAAAATTACAATGAATTAGCTGACATATATTCATTTGGTATGTGCATGCTTGAGTTGGTGACTTCTGAGTATCCTTACAGTGAATGCAGAAACTCAGCACAGATATATAAGAAAGTTTCATCTGTGAGTATTGTGTTATCAATAATTTTCTTTTTGAATAGGCCGACTAATGGGATTATTGGGGTCATACAAAATTTGATTTTGCAGGGCATAAAACCTGTTGCTCTTTCTAAAGTAATAGATCCAGAAATGAAATCACTTATTGAGAAATGTCTCGTCCCAGCATCTAAAAGATTGTCAGCAAAGGAGCTTTTGATGGACCCCTTTCTCCAAGTGAATGGTTCAACAAAGAATTGTCCTTTTCCATTGCCAGACATTGTTCTTCCCAAAGTGGGAGCCTTTGAAAGCCGATGTATGATGTCAGAAGGTCCCTCTAGTGTGAGAAATGGAGCCATTTCTACGGATGTTGATGACACCGATGAACTACCTGCGATCACTGTATTTGATAATTCTACTGGTGATGCATCACATTCTCGATGTGTTGAGATAAGAAGGTTGAAGGGAAGTGATGTCTTCTTTCTAAAAGGTGAAGAAAATGATGAGAATTCTGTATCATTAGTTCTGCGGATAGCTGATCAGAGTGGACGAGCAAGAAATATCCATTTCATATTCTACCTTGATAGTGATACTGCTGTCTCAGTTTCAAGTGAAATGGTCGAGCAACTGGAACTTGCTGATCAGAATGTTAAATTCATAGCAGAATTAATTGATTTGTTATTGATGAATCTGGTTTCTGATTGGAAACCTTGTGTAGTAATTGATCATTTAGTTTCTCCAAATGGTAAATGGACTAATGCTAGCAAAGAGGGAGTCTTGGAGTTGGCAAAAGACGAAGGAAGCTCAAAACATTCTACCAAAATTGTGTCTGTAGATGCAGGTCCCTCAACCTCCTCTGCAAGATCAGCAGCAAAAGAAAAACTTGATAATATGGATTTATGTTCTGAGATGTCATATGCTTCTGCAACATCAGACTTCAATGACAATAAGTTGTCCATAGCCTCATTCATGTCTGCTGAATCAGGATTTGATAAAGGGGGTCAATCCTCATCTCCATCTGAAAATGGGGCATCGCCTAAATATTGCAAGCTTTCGGACACGGGAAGCAACGGTATGATGAGCTTCTCTAGCTATCCCATCAGTGTTTCCTCCTTGTCTGAACCTGAAGATGAGTTGAGAATAGAGTTAGAAATGATTGAGCAGAAGTATCAAGAGGCACTTAAAGATTTATCCAAAAGAAGATACCAGGCCATCATGGATATTAAAAGGAGAATGTCAGAGAAGACGGTATCATAG 1977 0.3996 MSLAGTESSEEGAGHSEPPDPDVLEIDPTCRYIKYKEVIGKGAFKTVYKAFDEVNGIEVAWSQVQIDEVLQSPGDLERLYSEVHLLKSLRHNNIVRFYNSWIDEKHKTVNMITELFTSGSLKKYRKRHKKVDMKAIKGWARQILMGLIYLHSHNPPVIHRDLKCDNIFINGHQGEVKIGDLGLATFLERTNAKSVIGTPEFMAPELYDENYNELADIYSFGMCMLELVTSEYPYSECRNSAQIYKKVSSVSIVLSIIFFLNRPTNGIIGVIQNLILQGIKPVALSKVIDPEMKSLIEKCLVPASKRLSAKELLMDPFLQVNGSTKNCPFPLPDIVLPKVGAFESRCMMSEGPSSVRNGAISTDVDDTDELPAITVFDNSTGDASHSRCVEIRRLKGSDVFFLKGEENDENSVSLVLRIADQSGRARNIHFIFYLDSDTAVSVSSEMVEQLELADQNVKFIAELIDLLLMNLVSDWKPCVVIDHLVSPNGKWTNASKEGVLELAKDEGSSKHSTKIVSVDAGPSTSSARSAAKEKLDNMDLCSEMSYASATSDFNDNKLSIASFMSAESGFDKGGQSSSPSENGASPKYCKLSDTGSNGMMSFSSYPISVSSLSEPEDELRIELEMIEQKYQEALKDLSKRRYQAIMDIKRRMSEKTVS. 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06425 658 Gene3D Phosphorylase Kinase; domain 1 18 114 - -
Seca11g06425 658 MobiDBLite consensus disorder prediction 570 590 - -
Seca11g06425 658 FunFam Probable serine/threonine-protein kinase WNK1 18 114 - -
Seca11g06425 658 Gene3D Transferase(Phosphotransferase) domain 1 116 325 - -
Seca11g06425 658 Coils Coil 616 636 - -
Seca11g06425 658 SUPERFAMILY Protein kinase-like (PK-like) 35 355 IPR011009 -
Seca11g06425 658 CDD STKc_WNK 31 318 - -
Seca11g06425 658 MobiDBLite consensus disorder prediction 1 24 - -
Seca11g06425 658 Pfam Protein kinase domain 35 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06425 658 ProSiteProfiles Protein kinase domain profile. 33 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06425 658 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 18 649 - -
Seca11g06425 658 Gene3D - 410 478 - -
Seca11g06425 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Seca11g06425 658 FunFam WNK protein kinase 116 270 - -
Seca11g06425 658 SMART serkin_6 33 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06425 Seca-Chr11 164562588 164566087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06425 20 651 MAP Kinase Kinase Kinase AT5G41990 44.304 9.88e-164 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Seca11g06425 Pkinase 2.1e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06425 K08867 - gmx:121175054 841.647