Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06424 ATGGAGTTCTTGGACGAAGACGCGAGGCCAAGATTCATGTTCCAGTCTGGAGCACCCGCAGTTACAGACTCACAATCTCCCAACAAACCCACCAAGCCACTCCTCTTCGTCACCCTCACTCTTTCTTCCCTTCTTTTCGCTCTCGCTCTCTTCTTCTTCCAATCCGAACCCTTCAAATCCATCCTCTTCTGGCTCTCCTTATCCCTCCTCCTCGGCCCCTTCGCGCCTCTCTCCCTCACCGGCGGCGACGTCCGCGTTGGCCGCGGCCACATCGTCCAATTCCCCGATCATGACCCTGCCGCAGACGAGAAGAAGCCTCCGCAGCGGCGATCCAAGCCTCGCAGATCGGACGAAGTCGCCGCCTTCGTTTCCGCGGCGCCAGTGACAGTCGCGAACGGCCGCGCGTCCGAGAAGCGCAGTGGCGAGGGGAACGGCGTTGCAGCGGCGGTGGCGGAGGAGGAGAAGGAGTGGAACGAAGAGGACGTTGAGATTCTGAAGAAGCAGATGGCGAAGCATCCAGTGGGGAAACCCGGACGGTGGGAGGCGATCGCGGCGGCGTTCGGAGGGCGGCACAAGGCGGAGAGCGTGATCAAGAAGGTGAAGGAATTGGGGGAAAAGAGAGTAGATGATTCGGACTCGTATGCGCAGTTTCTGAAGAAGAGGAAAGCATTGGATAAGAGAGTTGTTGAGGATGCAGGTGAAGAAGAAAGCGAATCGGTGACGGTGGAGAAGGTTGAAGGTGGTTGGAGTAAAACGGAGGATATTGCGTTGCTGAATGCTTTGAAAGCGTTTCCGAAGGATGTTCCCATGAGATGGGAGAAAGTTGCTGCTGCGGTTCCAGGGAAATCCAAGGCTGCATGCATGAAGAGAGTTACTGAATTGAAAAAAGGGTTTCGGAGTGCAAAAGCTGCATCTGAAGTGTAG 924 0.5617 MEFLDEDARPRFMFQSGAPAVTDSQSPNKPTKPLLFVTLTLSSLLFALALFFFQSEPFKSILFWLSLSLLLGPFAPLSLTGGDVRVGRGHIVQFPDHDPAADEKKPPQRRSKPRRSDEVAAFVSAAPVTVANGRASEKRSGEGNGVAAAVAEEEKEWNEEDVEILKKQMAKHPVGKPGRWEAIAAAFGGRHKAESVIKKVKELGEKRVDDSDSYAQFLKKRKALDKRVVEDAGEEESESVTVEKVEGGWSKTEDIALLNALKAFPKDVPMRWEKVAAAVPGKSKAACMKRVTELKKGFRSAKAASEV. 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06424 307 CDD SANT 249 295 IPR001005 -
Seca11g06424 307 Gene3D - 241 306 - -
Seca11g06424 307 ProSiteProfiles Myb-like domain profile. 241 295 IPR001005 -
Seca11g06424 307 SUPERFAMILY Homeodomain-like 245 294 IPR009057 -
Seca11g06424 307 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 141 304 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Seca11g06424 307 FunFam Myb family transcription factor 243 303 - -
Seca11g06424 307 SMART sant 245 297 IPR001005 -
Seca11g06424 307 SMART sant 153 206 IPR001005 -
Seca11g06424 307 Coils Coil 148 168 - -
Seca11g06424 307 SUPERFAMILY Homeodomain-like 155 193 IPR009057 -
Seca11g06424 307 Gene3D - 150 209 - -
Seca11g06424 307 MobiDBLite consensus disorder prediction 92 117 - -
Seca11g06424 307 Pfam Myb-like DNA-binding domain 247 290 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06424 Seca-Chr11 164541075 164544740 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca11g06424 Myb_DNA-binding 2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06424 - - gmx:100780658 343.969