Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06423 ATGATGGATTATGAGCAATTTGATTACTCATTTAGCCCTCCCTATTTGAATCAACTCCATGAGTGTAGCTTAGAAAATGCATTTCCATTCCAAGTAGAAGATCCCTTATCTCCAAATACAATCCAGCTGAATGAAATGTTTAATCAAAACCAAGCAGAGGATCAATTATCTCCAAATACCATCCTAGATGAAATATTTGATCAACAGTCCATGGTGCAGCAACACACAAAGAACCAGGACTTTGATTTCATGAATCATACCCAAAAAGCCCAGGAAAATGTGCACGTTTCAAGGGAAGGAGATTCTTATTTGAAAGGGATTCAAGCAGAGCTAATGGAAGAGACTAGTTTAGCTGATCTCTTACTGACAGCAGCTGAAGCTGTTGAAGCACAGAACTGGCCTATTGCTTCAGACATAATTGAGAAACTAAACAATGTCTCATCTTTAGAAAATGGAGATAGTTTATTGAACAGGTTGGCTCTTTTCTTTGCTCAGGGTCTGTATTATAAAAGTATAAATGCTCCTGAATTGCAGTGTGTTCCTGTTTCTACACAGACAAGCACTTTCTGTGTGTTCCAGATACTTCAGGAACTTTCTCCCTATGTCAAATTTGCTCACTTCACTGCCAACCAAGCAATCCTTGAAGCTACAGAAGGTGCTGAGGATGTTCACATCATTGATTTTGACATCATGGAAGGGATCCAGTGGCCACCATTGATGGTAGACCTTGCAATGAGGAAGAGTACCAATACTTCCCTCAGAGTAACTGCCATAACAGTAGACCAGCAAAGTGCAGCCTCTGCTCAACAAACAGGGAAAAGGCTTCAAGAGTTTGCAGCTTCTATCAATTTTCCATTCATGTTTGATCAGATAATAATGGGGAGTGAAGTAGATGTTCAAAGAATTGAACTTGGTCACACACTCATAGTCAACTGCATGATACACCAGTGGATGCCTAACAGGAGTTTCTCATTGGTCAAAACTTTCTTAGATGGTGTAAGCAAATTATCTCCCAGGCTTGTTGTTTTAGTGGAAGAAGAACTGTTCAATTTTTCTAGACTCAAATCCATGTCCTTTGTGGAATTCTTCTATGAGGCTTTGCATCACTACACTGCACTTTCTGATTCACTTGCTAGTAGTATGTGGGGTAGCCACAAGATGGAGTTAAAACTGATAGAAAAAGAGGTTCTGGGGCTCAGAATCTTAGACAGTGTAAGACAGTTTCCTTGTGAAAGAGAGGAGAGAATATTGTGGGAAGAAGGGTTATATTCCTTGAAAGGGTTTAAACGTGTTAGTATGAGTAACTCTAATATTTCACAAGCCAAGTTCTTGAGCCTGTTTGGGAAAGGATATTGGGTTCAATTCGAGAAGGGTAGGTTGGCTTTGTGTTGGAAGTCAAGGCCTTTGACTGCAGCTTCAATCTGGGTACCAACAGCTAATCTGAGTGACATGGTCAAATAG 1461 0.4011 MMDYEQFDYSFSPPYLNQLHECSLENAFPFQVEDPLSPNTIQLNEMFNQNQAEDQLSPNTILDEIFDQQSMVQQHTKNQDFDFMNHTQKAQENVHVSREGDSYLKGIQAELMEETSLADLLLTAAEAVEAQNWPIASDIIEKLNNVSSLENGDSLLNRLALFFAQGLYYKSINAPELQCVPVSTQTSTFCVFQILQELSPYVKFAHFTANQAILEATEGAEDVHIIDFDIMEGIQWPPLMVDLAMRKSTNTSLRVTAITVDQQSAASAQQTGKRLQEFAASINFPFMFDQIIMGSEVDVQRIELGHTLIVNCMIHQWMPNRSFSLVKTFLDGVSKLSPRLVVLVEEELFNFSRLKSMSFVEFFYEALHHYTALSDSLASSMWGSHKMELKLIEKEVLGLRILDSVRQFPCEREERILWEEGLYSLKGFKRVSMSNSNISQAKFLSLFGKGYWVQFEKGRLALCWKSRPLTAASIWVPTANLSDMVK. 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06423 486 ProSiteProfiles GRAS family profile. 108 476 IPR005202 -
Seca11g06423 486 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 93 471 IPR005202 -
Seca11g06423 486 Pfam GRAS domain family 118 475 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06423 Seca-Chr11 164538425 164539885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06423 117 475 GRAS Transcription Factor Family AT5G41920 35.106 1.32e-49 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca11g06423 GRAS 1.2e-78 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06423 - - lja:Lj0g3v0198459.1 750.74