Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06422 ATGTTTGCTTCTACTTCCTTTACTTCACAGCTCATTCATGACCTTCTTGTGAATTCCCAAACAAGAAGGTTACTCCTTGAAAACCCACTTCACCAATCATCACCAAACTCCTCAGATTCAATGATGAACAGCCACAATTCAACAACAACAGATTCATATTTCGGAAGCCGTGACTTTGATGCAAATGTTGTGATGATCCTTGCAGTCCTATTATGTGCTCTTATTTGCTCACTTGGGTTGAACTCCATCATAAGGTGTGCCTTAAGGTGTTCCAACATAGTCATCAATGACTCTTCATCATCAAGCAACAACAACCCTTCATCTAGATTGGCTAACACAGGAATCAAGAAGAAAGCTCTGAAGACATTTCCAACAATAAGCTACACAACAGAGTTGAAACTGCCAGGTTTGGATACAGAGTGTGTGATATGTCTCTCAGAGTTCAATAATGGAGAAAAGGTGAGAATTTTGCCAAAATGCAACCATGGTTTCCATGTGAGATGCATTGATAAATGGCTAAGCTCACGCTCATCATGCCCAAAGTGTAGACAGTGTCTCATAGAGACTTGCAAAAAGATTGTTGGGTCAAGAGCAGTACCACCAGTGGCAGTGATGCCAGTGCCAGAAACCATTATAAGGATAGAACCATTAGAGCCAGAAGGTGTGGAGCGTAGCTATAGGGAAGTGACTAGCTGCTAA 699 0.4163 MFASTSFTSQLIHDLLVNSQTRRLLLENPLHQSSPNSSDSMMNSHNSTTTDSYFGSRDFDANVVMILAVLLCALICSLGLNSIIRCALRCSNIVINDSSSSSNNNPSSRLANTGIKKKALKTFPTISYTTELKLPGLDTECVICLSEFNNGEKVRILPKCNHGFHVRCIDKWLSSRSSCPKCRQCLIETCKKIVGSRAVPPVAVMPVPETIIRIEPLEPEGVERSYREVTSC. 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06422 232 CDD RING-H2_EL5-like 140 183 - -
Seca11g06422 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 187 IPR013083 -
Seca11g06422 232 FunFam RING-H2 finger protein ATL73 100 188 - -
Seca11g06422 232 SMART ring_2 141 182 IPR001841 -
Seca11g06422 232 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Seca11g06422 232 SUPERFAMILY RING/U-box 119 188 - -
Seca11g06422 232 Pfam Ring finger domain 140 183 IPR001841 -
Seca11g06422 232 PANTHER RING-H2 FINGER PROTEIN ATL78 16 222 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06422 Seca-Chr11 164519715 164520434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06422 23 187 C3H Transcription Factor Family AT3G10910 49.704 1.12e-45 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06422 K19040 - gmx:100527126 340.117