Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06410 ATGGCAAAATCCCCTGCAACTGAACTCCCACTCAAAGCTTTTGGCTGGGCTGCAAGAGACACTTCTGGAATCCTCTCACCCTTTCATTTCTCCAGAAGGGAAAATGGCGATGATGATGTCACTCTCAAAATTCTATTTTGTGGGGTTTGCCATTCTGATCTGCACACTGTCAAAAACGATTGGGGTTTCACAACTTACCCTGTTGTTCCTGGGCATGAAATTGTTGGTGTTGTGACAAAAACTGGAAATAATGTGAAAAAATTCAGAGTGGGTGATAAAGTTGGAGTTGGTGTACTGGTGGAATCCTGTATGGCATGTGAGAATTGCCAGCAGGATCTGGAGAATTATTGTCCTAAACCTGTGTTTACTTATAATTCTCCTTACAAGGGGACACGAACCAATGGTGGCTATTCTGATTTTGTGGTTGTTCACCAGCGGTATGTGCTCCTATTTCCTGACAACTTACCCCTTGATGCTGGTGCTCCACTACTGTGTGCTGGGATTACTGTGTATAGCCCAATGATGTATTATGGGATGACCGAGCCTGGTAAACATTTGGGAGTGGCAGGGCTTGGTGGGTTAGGCCATATTGCAATCAAATTGGGTAAAGCATTTGGGCTGAAAGTTACTGTCATTAGTACCTCTCCCAACAAGGAAGCTGAGGCCATTGAAAGACTTGGTGCTGATTCTTTTGTTGTTTCCACAGATCCTGAAAAAATGAAGGCAGCTATGGGAACACTGGACTATATCATAGACACAATTTCTGCTGTTCATTCCCTGATTCCACTGCTTGGCCTACTGAAGCTGAACGGAAAGCTGGTCATGGTGGGGTTACCTGGCAAGCCCCTTGAGCTGCCTGTCTTTCCTATAGTTGGTGGACGGAAGCTTATAGGGGGAAGCAACTTTGGAGGGTTAAAGGAGACTCAGGAGATGCTTGATTTCTGTGGAAAGCACAACATAACTGCAGATATTGAACTGATAAAGATGGACCAAATCAACACAGCCATGGAAAGGCTTAGCAAAGCTGATGTGAAATATCGCTTTGTGATTGATGTGGCTAATTCCTTTTCAAGCCATGGAATACACAAACTTTGGGTATACTCCACAGATGAACCTCTGTTCCCAAATAGCCCAACCAGGCCTCGATCAGAAATCCGCATTACAGGCTATGATTATTCATCTGGGGTATGGCAATTTGAAGGGCAAGGATTTGTGCCTAATGGTACTTCTGGTGCATGCATTATGCAAGTGTTTGGGGCACACCAAGGTCGCGCCACCACATTTATGCTTATAGCCTACAACAATTCACTTTTGTATTATAATGGTCCAGTCCTTGTTCCAAACATATGGGACAGATGGTTCCAGTTAAATGTGATCCATGATGTGGAGGCTTCCATTGTTAAGGTTTATGTTGATGGGGTTCAGGTTTATGAAGCCCCGGGTCAGGGAGGTAGCTCCCATTATTTCAAATTTGGTGTTTATACAACACAGGATGATCCTTCTTACTACATGGAGTCAAGGTGGAAGGGAATTAGAGTTCTTAGAAAATGTTCATGA 1557 0.4399 MAKSPATELPLKAFGWAARDTSGILSPFHFSRRENGDDDVTLKILFCGVCHSDLHTVKNDWGFTTYPVVPGHEIVGVVTKTGNNVKKFRVGDKVGVGVLVESCMACENCQQDLENYCPKPVFTYNSPYKGTRTNGGYSDFVVVHQRYVLLFPDNLPLDAGAPLLCAGITVYSPMMYYGMTEPGKHLGVAGLGGLGHIAIKLGKAFGLKVTVISTSPNKEAEAIERLGADSFVVSTDPEKMKAAMGTLDYIIDTISAVHSLIPLLGLLKLNGKLVMVGLPGKPLELPVFPIVGGRKLIGGSNFGGLKETQEMLDFCGKHNITADIELIKMDQINTAMERLSKADVKYRFVIDVANSFSSHGIHKLWVYSTDEPLFPNSPTRPRSEIRITGYDYSSGVWQFEGQGFVPNGTSGACIMQVFGAHQGRATTFMLIAYNNSLLYYNGPVLVPNIWDRWFQLNVIHDVEASIVKVYVDGVQVYEAPGQGGSSHYFKFGVYTTQDDPSYYMESRWKGIRVLRKCS. 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06410 518 Gene3D - 16 352 - -
Seca11g06410 518 Gene3D - 166 322 - -
Seca11g06410 518 FunFam Cinnamyl alcohol dehydrogenase 166 322 - -
Seca11g06410 518 Pfam Alginate lyase 376 513 IPR014895 -
Seca11g06410 518 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Seca11g06410 518 FunFam Putative cinnamyl alcohol dehydrogenase 6 323 352 - -
Seca11g06410 518 FunFam probable cinnamyl alcohol dehydrogenase 16 175 - -
Seca11g06410 518 Pfam Alcohol dehydrogenase GroES-like domain 38 149 IPR013154 -
Seca11g06410 518 SUPERFAMILY GroES-like 22 184 IPR011032 -
Seca11g06410 518 SMART PKS_ER_names_mod 23 350 IPR020843 GO:0016491
Seca11g06410 518 SUPERFAMILY Concanavalin A-like lectins/glucanases 377 500 IPR013320 -
Seca11g06410 518 Pfam Zinc-binding dehydrogenase 193 314 IPR013149 -
Seca11g06410 518 CDD CAD1 14 351 IPR047109 GO:0016616
Seca11g06410 518 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 320 IPR036291 -
Seca11g06410 518 PANTHER ALDEHYDE REDUCTASE 7 355 IPR047109 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06410 Seca-Chr11 164417286 164427643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06410 12 356 Monolignol Biosynthesis Gene Families AT2G21730 70.977 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06410 K00083 - gmx:100819684 610.142