Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06406 ATGGACTTTGACGAGTACGAGTACTTGGAGAAGACAGTGGAGGAGCAGCAGCAGGAAGACAAAGATTCCTCGAAGAAGAAGAAGAGTGAGAGCACCGAAAAGAGCGAGAGGAGTTACCGGAAGCGCGACGTCGACGAAGATCTCGACGGCGAAGACAGGCGGAGCAAGAGGTCTAGGGGTGACGATGAGAATGGCTCGAAGAAGGATCGTGACAGGGAGAGAGACAGAGACCGAGACCGCTCCTCTTCCGGCCGCCACAGGGAGAGGGAGAGGGACGGAGAAAGGAGTAGCAGAGACAAAGAGAGGGATAGGGAGAGGGAAAGGAGAGATAGGGATAAGGATAGGGAAAAGGAACGGGAGAGAAGAGATAGAGAGAGGGAGAAGGAGCGAGAGAGAGAAAAGGAGGAGAGGGAGAGATCCAGGAGGAGCAGGAGTCGTTCCGAGAGAGATAGAGATAGAGATAGAGAAAGAGAGCGAGATTTCGAAACGCGAGATGGCAGGAGATTTAGGGATAAGAAAGAGGCTGTGGAACCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCCTATCAGATGCCCCTAAAAGCAACAGAGAGAGATGTATATGAGTTCTTCTCAAAAGCTGGAAAGGTGAGAGATGTCCGTCTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCGATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTTCTTGGGCAACCTGTTATGGTGAAACCTTCTGAGGCTGAAAAGAACCTTGTTCAATCCAATGCTACTGGTGGAGCTGCTGGTGCAACAGGACCATATGGAGCAGTGGACAGAAAATTGTATGTGGGGAATCTTCACTTCAACATGACTGAGAGTCAGCTGCGGGAGATTTTTGAGCCATTTGGTCCAGTTGAGGTTGTCCAACTGCCTCTTGACATGGAGACAGGACACTGCAAGGGTTTTGGGTTTGTTCAATTTGCCCATCTTGAACATGCCAAGGCAGCTCAGAGTTTAAATGGAAAATTAGAGATTGCTGGCAGGACTATCAAGGTTTCATCGGTAACAGATCATGTTGGGAGCCAGGATACAACTGCAAAATCTGCAGACTTGGATGATGATGAAGGTGGATTGACCTTAAATGCCCACTCAAGAGCATTGCTTATGCAAAGGCTGGCTGGCTCTGACATTCCCACAAGCATTGGTGTGCCCGCTGTGAATGGGTCAGTTCCTGTTCAGCAGGCTTTTAGCTTGCCTATTGCGCCAGTTCTACCAACACAAGTTATGCCTACCCCAGTCGTAGAACCTGTAGGAACCCCGAGCGAGTGTTTACTATTGAAGAATATGTTTGATCCAAGCACTGAGACGGAACCAGATTTTGATATAGACATTAAAGAGGATGTAGAGGAAGAGTGTTCTAAATATGGCCGGGTGAAGCATATTTATGTCGACAAGTAA 1488 0.4812 MDFDEYEYLEKTVEEQQQEDKDSSKKKKSESTEKSERSYRKRDVDEDLDGEDRRSKRSRGDDENGSKKDRDRERDRDRDRSSSGRHRERERDGERSSRDKERDRERERRDRDKDREKERERRDREREKEREREKEERERSRRSRSRSERDRDRDRERERDFETRDGRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNATGGAAGATGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQDTTAKSADLDDDEGGLTLNAHSRALLMQRLAGSDIPTSIGVPAVNGSVPVQQAFSLPIAPVLPTQVMPTPVVEPVGTPSECLLLKNMFDPSTETEPDFDIDIKEDVEEECSKYGRVKHIYVDK. 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06406 495 FunFam Splicing factor CC1-like 273 378 - -
Seca11g06406 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 264 IPR000504 GO:0003723
Seca11g06406 495 MobiDBLite consensus disorder prediction 1 187 - -
Seca11g06406 495 SUPERFAMILY RNA-binding domain, RBD 180 270 IPR035979 GO:0003676
Seca11g06406 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 256 IPR000504 GO:0003723
Seca11g06406 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 361 IPR000504 GO:0003723
Seca11g06406 495 Coils Coil 114 150 - -
Seca11g06406 495 SMART rrm1_1 188 260 IPR000504 GO:0003723
Seca11g06406 495 SMART rrm1_1 290 363 IPR000504 GO:0003723
Seca11g06406 495 MobiDBLite consensus disorder prediction 10 186 - -
Seca11g06406 495 SUPERFAMILY RNA-binding domain, RBD 448 494 IPR035979 GO:0003676
Seca11g06406 495 CDD RRM1_RBM39_like 188 260 - -
Seca11g06406 495 Gene3D - 447 495 IPR012677 -
Seca11g06406 495 Gene3D - 114 272 IPR012677 -
Seca11g06406 495 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 382 470 IPR029123 -
Seca11g06406 495 Gene3D - 284 381 IPR012677 -
Seca11g06406 495 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 495 IPR006509 GO:0003723|GO:0005634|GO:0006397
Seca11g06406 495 NCBIfam splicing factor, CC1-like family 68 495 IPR006509 GO:0003723|GO:0005634|GO:0006397
Seca11g06406 495 SUPERFAMILY RNA-binding domain, RBD 288 366 IPR035979 GO:0003676
Seca11g06406 495 CDD RRM3_RBM39_like 451 495 - -
Seca11g06406 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 367 IPR000504 GO:0003723
Seca11g06406 495 FunFam Splicing factor CC1-like 108 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06406 Seca-Chr11 164369163 164375605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06406 261 362 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 2.37e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06406 K13091 - gmx:100793461 617.076