Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06403 ATGTCAAAGGTGGCGAGTCCTAATGAAAAGGGAAACGAGGTAGACCATAGTAACTTTGATGAAGAGAGACACAATCCCAAGTTGTCAATGCCGATGATGTTTCCAGGTTTGAATAAGGAGAAGGAGATGTCAGCTATGATCTCTGCTTTGACCCATGTGATCTGTGGAGAGGATTCAAATGGTGATCAGAAAAGGGACTACACTGCATTTGGTGGTGGTGTTTATACTGATGCTTTTCCTGTGACACCAAACATGCCTTCTGCTTCTGCAAAACCTTCTTCCACTTCTTCATCTTATGGTGGCAGTTCTGCTCTCAAGAGAAGGAGAGAAGATGATGGATCCCCTGCTTTTCCCACAATTGCAGAATGTTCAAGCAACTGGACCAACACAACAGCAACAACAATAAAAGAAGAAATGAACCAAATGGAAAAACCTGTATATGAATACAGAACAGACGTAGTGAGAGAGGGATCACAGAATGAGCAACCAAGGAGAAAATACAGAGGAGTGAGACAGAGACCATGGGGGAAGTGGGCTGCAGAGATCAGAGACCCTTTCAAAGCAACAAGAGTTTGGTTAGGAACATTTGAAACAGCTGAGGCAGCAGCAAGAGCCTATGATCAAGCTTCATTGCGTTTCAGAGGCAACAAAGCAAAACTCAATTTCCCTGAAAATGTTAGGCTCATACAACCTCCTCCCCTGAATCCACCACCGACCCATTTGAGCATTTCAGATTCTCATAGTGCCTTTATGTCAATTTCATCAACCACTGAGCCAATAGTTCATACTGAAGCTCTCCACACTTTGCAGGGTTCAAATGGTTCAGGCAAATTTTATGACTTTCATCACCCAATGAGTTTATATGATCAGATTACTGTGTCATCATCCACTATGGCTTCTCATATTCAACCATCCCCTTCACCATCAGCTTCGCATTCTTCTTCTTCAACGTTTGCTTCTTCAGTGACTTCTCCACAAACAGCTTCGGTTCCTTTGGTTTATTCTACCGAACTGCCAGCATGGTATTCTGTTTATAGCTCCTCTCCCTCTGGTTCTCGCTCTGCCTCATAA 1071 0.4342 MSKVASPNEKGNEVDHSNFDEERHNPKLSMPMMFPGLNKEKEMSAMISALTHVICGEDSNGDQKRDYTAFGGGVYTDAFPVTPNMPSASAKPSSTSSSYGGSSALKRRREDDGSPAFPTIAECSSNWTNTTATTIKEEMNQMEKPVYEYRTDVVREGSQNEQPRRKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFETAEAAARAYDQASLRFRGNKAKLNFPENVRLIQPPPLNPPPTHLSISDSHSAFMSISSTTEPIVHTEALHTLQGSNGSGKFYDFHHPMSLYDQITVSSSTMASHIQPSPSPSASHSSSSTFASSVTSPQTASVPLVYSTELPAWYSVYSSSPSGSRSAS. 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06403 356 ProSiteProfiles AP2/ERF domain profile. 166 223 IPR001471 GO:0003700|GO:0006355
Seca11g06403 356 MobiDBLite consensus disorder prediction 1 34 - -
Seca11g06403 356 MobiDBLite consensus disorder prediction 85 103 - -
Seca11g06403 356 MobiDBLite consensus disorder prediction 299 327 - -
Seca11g06403 356 CDD AP2 166 225 IPR001471 GO:0003700|GO:0006355
Seca11g06403 356 MobiDBLite consensus disorder prediction 9 27 - -
Seca11g06403 356 Pfam AP2 domain 166 215 IPR001471 GO:0003700|GO:0006355
Seca11g06403 356 Gene3D AP2/ERF domain 165 225 IPR036955 GO:0003700|GO:0006355
Seca11g06403 356 SMART rav1_2 166 229 IPR001471 GO:0003700|GO:0006355
Seca11g06403 356 MobiDBLite consensus disorder prediction 85 120 - -
Seca11g06403 356 PRINTS Ethylene responsive element binding protein signature 189 205 IPR001471 GO:0003700|GO:0006355
Seca11g06403 356 PRINTS Ethylene responsive element binding protein signature 167 178 IPR001471 GO:0003700|GO:0006355
Seca11g06403 356 PANTHER DNA-BINDING DOMAIN 128 307 IPR044808 GO:0003700|GO:0009873
Seca11g06403 356 SUPERFAMILY DNA-binding domain 166 224 IPR016177 GO:0003677
Seca11g06403 356 FunFam Ethylene-responsive transcription factor 2 165 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06403 Seca-Chr11 164338628 164340136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06403 33 240 AP2-EREBP Transcription Factor Family AT5G64750 41.629 9.87e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca11g06403 AP2 6.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06403 - - tpra:123913316 313.538