LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g06392	ATGGGATGCGTCAGTAGCAAGTACACTCCCCCTCGAACCCGAACCCGAAGCAGAAACCGACACAGAGACCGAAACCGCGACGATGAGAGGTTGAAACGGGACAATGAGTTCGCAAGCAATGGTTCTGCACCCAAACCAATCAGCACCCAGCAGAAGGACGTGGGAGTGGAGACAAAGAAGAGAGTAGAGAGTGTGAGTGGACATAAGACTACTTCAGAAGGAGATACTGATCATAGTGTAAAGGGTGTTTCTAGAAACGATGACAAGAGTGAGGTTGGGAATGTTTCCGGTTGGTCTGAGGAGAAGAAGAAGAAGAAGATTGCTAGCAATGAATCAGAGGACGGGTGGCCAAAATGGCTGGTTGATAATATCCCAAAAAATGTTTTGGATAGTTTGGTTCCCAAGAGTGCTGATTGCTATGAAAAACTCGGAAAGGTAGGACGTGGAACATATAGCAATGTGTACAAAGCCCGAGATAAGGACACTGGGAGGATTGTTGCTTTGAAGAAGGTACGCTTTGACACATCAGATTCTGAAAGCATCAAGTTTATGGCAAGAGAGATCATGATACTGCAGACACTGGATCATCCCAATGTCATCAAACTTGAAGGACTAGCAACATCAAGGATGCAGTATAGTCTTTATCTAGTTTTTGATTACATGCAGTCTGACCTTACCAGAATTATCTCTCGCCCTGGGGAGAGACTCACTGAACCACAGTATTTTATGCAGATCAAATGTTTCATGCAGCAGCTCCTTTTGGGGCTAAAGCATTGTCATGAGAGGGGAGTTATGCACCGAGATATTAAACCTTCTAACTTGTTAATAGATAAAAGAGGGGTGCTAAAAATTGCAGATTTTGGGCTTGCAAATTCTTCTAAGATTAAACCTGAAGGGCCTCTTACAAGTCGAGTGGTGACACTTTGGTATAGAGCTCCTGAACTTCTCTTAGGTTCAACCAATTATGATGATAACATTGATCTCTGGAGTGCAGGATGCTTGTTGGCTGAGATGTTTGTTGGAAGACCAATTATGCCCGGGAGGACAGAGGTTGAACAGCTTCACATGATCTTCAAACTTTGTGGTTCACCTTCAGATGATTACTGGATGAAAATGAAGCTAATGACAAGTTTCCGTCCACCACAACATTATAAAGCTAGTTATGAAGAAAACTTTCAGGTTTTCCCTTCCTCTGCCCGTGGTCTCTTGACTACACTTCTTAATCTAGACCCTGAATGTCGTGGCAGTGCTGCCTCTGCTCTTGAAAGTGAATTCTTCAAATCTAGTCCATCAGCATGTGACATTTCAGAGTTAGCAGTAATCTACAAATGCGAGGATGAACGCTCACAAACTAAGAGACGGAAAAGGCGCAAACATTTGGACAAAAGGCAAGAATCTAAAACAAGAACAAGCAATGTAAGCATATTAGGAAAGAACCAAACTGCTATAATCAGGAGAGATTCAGAACCATCAAAGGAGGAGAAGAGTGTGAAACAAAACATGCAAGATCAAGAAACAGGGAATAGTGGAAGCAGCAAATCATCACTATTTATGAACGAAAGGAGCATGAATGCATCTATATCCCCAGTTTTTGTCTCTAGTGGGAGAAAATCCCCCAAAACTGAAGGACATCCTAATGCTCTTAAGAACATAAAGAACTACACCCTCTTACAGGCCTCTATTATTGATATGATCAATCGCAACGAAGGCAATGAATTTGGTCAGTATCGCAGGTCCCTTTCTATGTTGGATCTTCGACTTGATCCAGACAAGTTATCAAGGTAG	1785	0.4258	MGCVSSKYTPPRTRTRSRNRHRDRNRDDERLKRDNEFASNGSAPKPISTQQKDVGVETKKRVESVSGHKTTSEGDTDHSVKGVSRNDDKSEVGNVSGWSEEKKKKKIASNESEDGWPKWLVDNIPKNVLDSLVPKSADCYEKLGKVGRGTYSNVYKARDKDTGRIVALKKVRFDTSDSESIKFMAREIMILQTLDHPNVIKLEGLATSRMQYSLYLVFDYMQSDLTRIISRPGERLTEPQYFMQIKCFMQQLLLGLKHCHERGVMHRDIKPSNLLIDKRGVLKIADFGLANSSKIKPEGPLTSRVVTLWYRAPELLLGSTNYDDNIDLWSAGCLLAEMFVGRPIMPGRTEVEQLHMIFKLCGSPSDDYWMKMKLMTSFRPPQHYKASYEENFQVFPSSARGLLTTLLNLDPECRGSAASALESEFFKSSPSACDISELAVIYKCEDERSQTKRRKRRKHLDKRQESKTRTSNVSILGKNQTAIIRRDSEPSKEEKSVKQNMQDQETGNSGSSKSSLFMNERSMNASISPVFVSSGRKSPKTEGHPNALKNIKNYTLLQASIIDMINRNEGNEFGQYRRSLSMLDLRLDPDKLSR.	595

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g06392	594	SMART	serkin_6	140	426	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g06392	594	Gene3D	Phosphorylase Kinase; domain 1	128	222	-	-
	Seca11g06392	594	FunFam	Mitogen-activated protein kinase	221	440	-	-
	Seca11g06392	594	MobiDBLite	consensus disorder prediction	448	516	-	-
	Seca11g06392	594	FunFam	probable serine/threonine-protein kinase At1g54610	127	222	-	-
	Seca11g06392	594	Pfam	Protein kinase domain	140	426	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g06392	594	MobiDBLite	consensus disorder prediction	1	109	-	-
	Seca11g06392	594	MobiDBLite	consensus disorder prediction	485	500	-	-
	Seca11g06392	594	MobiDBLite	consensus disorder prediction	501	516	-	-
	Seca11g06392	594	Gene3D	Transferase(Phosphotransferase) domain 1	223	468	-	-
	Seca11g06392	594	MobiDBLite	consensus disorder prediction	21	36	-	-
	Seca11g06392	594	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	264	276	IPR008271	GO:0004672\|GO:0006468
	Seca11g06392	594	SUPERFAMILY	Protein kinase-like (PK-like)	135	430	IPR011009	-
	Seca11g06392	594	ProSiteProfiles	Protein kinase domain profile.	140	426	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g06392	594	MobiDBLite	consensus disorder prediction	54	109	-	-
	Seca11g06392	594	ProSitePatterns	Protein kinases ATP-binding region signature.	146	169	IPR017441	GO:0005524
	Seca11g06392	594	PANTHER	CELL DIVISION PROTEIN KINASE	138	430	-	-
	Seca11g06392	594	CDD	STKc_CDK9_like	140	426	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g06392	Seca-Chr11	164258089	164261939	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g06392	135	458	Core Cell Cycle Gene Families	AT5G10270	45.906	1.76e-93	294

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Seca11g06392		Pkinase	2.8e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g06392	K08819		-	gmx:102667260	746.888