Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06386 ATGTTGGTAGTCCATTACAGGGCGTGGTCTGAGAGCACGCAGCACAAGTTTGAAGACACATGGCAGGAGCAACGACCAATTGAGATGGTATTAGGAAAAGAGAAGAAAGAAATGACTGGCTTGGGGATTGGTGTGGCCAGCATGAAAGCTGGGGAGCGGGCATTGCTGCGGGTGGGCTGGGAATTAGGATATGGAAAAGAAGGAAGTTTTTCTTTTCCAAATGTTCCACCCATGGCAGATTTAGTTTATGAAGTCGTGTTCATCGGCTTTGATGAAACAAAAGAGGGAAAAGCTCGCAGTGATATGACTGTAGAGGAGAGGATTGGTGCTGCAGATCAGAGAAAGATGGATGGAAATAATTTGTTTCAGGAAAATAAACTAGAGGAGGCTATGCAACAGTATGAAATGGCCATAGCGTATATGGGAGATGACTTCATGTTCCAATTGTTTGGGAAGTATAGAGATATGGCTCTGGCAGTAAAGAATCCATGCCATCTTAACATGGCAGCCTGTTTAATTAAGCTGAACCGCTATGAAGAAGCTATAGGACAATGCAGCATTGTACTGAGTGAGGATGAGAATAATGTCAAGGCATTATTTAGGCGAGGTAAGGCTAGAGCGGCACTTGGACAAATAGACGCCGCCAAGGAAGATTTCCAGAAAGCACGTAAGTATGCCCCTGAAGATAAAGCAATTGCAAGAGAATTGAGGTTGCTTGCTGAACATGACAAGGCTGTTTATCAAAAGCAAAAAGAGATCTATAAAGGAATATTTGGACCAAGGCCTCAACCGGTACCCAAGAGAAGGAATTTGCTAATACTTATTTGGCAGTGGTTGCTTTCACTATTTTATGGTCTTGTCTCGCTCTTCAAGCGTGAAAAGAACAAATCTGACTAA 897 0.4314 MLVVHYRAWSESTQHKFEDTWQEQRPIEMVLGKEKKEMTGLGIGVASMKAGERALLRVGWELGYGKEGSFSFPNVPPMADLVYEVVFIGFDETKEGKARSDMTVEERIGAADQRKMDGNNLFQENKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLNRYEEAIGQCSIVLSEDENNVKALFRRGKARAALGQIDAAKEDFQKARKYAPEDKAIARELRLLAEHDKAVYQKQKEIYKGIFGPRPQPVPKRRNLLILIWQWLLSLFYGLVSLFKREKNKSD. 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06386 298 SUPERFAMILY TPR-like 102 254 IPR011990 GO:0005515
Seca11g06386 298 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 1 91 IPR001179 GO:0003755
Seca11g06386 298 Gene3D - 1 92 IPR046357 GO:0003755
Seca11g06386 298 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 3 86 IPR001179 GO:0003755
Seca11g06386 298 Gene3D Tetratricopeptide repeat domain 93 224 IPR011990 GO:0005515
Seca11g06386 298 ProSiteProfiles TPR repeat profile. 196 229 IPR019734 GO:0005515
Seca11g06386 298 Pfam Tetratricopeptide repeat 197 229 IPR013105 -
Seca11g06386 298 SMART tpr_5 111 144 IPR019734 GO:0005515
Seca11g06386 298 SMART tpr_5 196 229 IPR019734 GO:0005515
Seca11g06386 298 SMART tpr_5 162 195 IPR019734 GO:0005515
Seca11g06386 298 FunFam Peptidylprolyl isomerase 96 224 - -
Seca11g06386 298 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 26 267 IPR039663 -
Seca11g06386 298 SUPERFAMILY FKBP-like 2 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06386 Seca-Chr11 164209811 164212249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06386 4 95 Calmodulin-binding Proteins AT3G25230 31.522 5.53e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06386 - - gmx:100790587 541.191