Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06379 ATGGGTCCCCTTACACTGTCTGTTAGGGTGCAAGACTCTGCCATTTCATTACCCGAGGGCTGTAATAAGAGAAAACAGAACTTGCTTCTGAGAAATTCTTTTGCTTCAGTTAGCATGGGGGAGGAAAAGCCCTTTGACTTCTTACGCACTTTATTTGAGGGTGTTATTGCAGGAGGTACAGCTGGAGTTGTTGTTGAAACAGCTTTATACCCAATTGACACTATAAAAACACGTCTGCAGGCAGGTTTTTGTAACGCTGCTCGAGGAGGAGAAAAACTAATATTGAAAGGCCTTTATTCTGGATTGGCAGGGAACCTTGCTGGTGTCTTACCGGCGTCTGCTCTATTTGTTGGAGTTTATGAACCTATAAAGCAGAAATTGCTAAGGATATTTCCTGAGAATCTGAGTGCTTTTGCTCATTTAACTGCAGGTGCCATAGGGGGCATTGCTGCTTCATTGGTTCGTGTTCCAACAGAGGTTGTTAAACAACGAATGCAAACTGGGCAGTATACTTCAGCTTCTGGTGCTGTTCGCTTTATTGCATCTAAGGAGGGCTTTAAAGGATTTTATGCTGGCTATGGATCTTTCTTATTGCGAGATTTACCTTTTGATGCTATTCAGTTTTGCATCTATGAGCAGATCCGAATAGGTTATAAGCTTGCGGCGCGAAGAGATCTGAATGACCCAGAAAATGCAATTATTGGTGCTTTTGCAGGTGCTCTAACTGGAGCTATAACTACCCCCCTTGATGTCATTAAGACAAGGTTAATGATTCAGGGATCTGCAAACCGTTATAAGGGAATCGTAGATTGTGTTCAAACTATTATTAAGGAAGAGGGACCTGGTGCCTTTCTGAAGGGTGTTGGGCCAAGGGTACTATGGATAGGCATAGGTGGTTCAATATTCTTTGGTGTCCTTGAGGGCACAAAACGTTTCCTTGCTGAGAGGCGTCCTACAGTAGCTCAGTACACAAACTCAGAAAAAAGTAAGGATTAA 996 0.4297 MGPLTLSVRVQDSAISLPEGCNKRKQNLLLRNSFASVSMGEEKPFDFLRTLFEGVIAGGTAGVVVETALYPIDTIKTRLQAGFCNAARGGEKLILKGLYSGLAGNLAGVLPASALFVGVYEPIKQKLLRIFPENLSAFAHLTAGAIGGIAASLVRVPTEVVKQRMQTGQYTSASGAVRFIASKEGFKGFYAGYGSFLLRDLPFDAIQFCIYEQIRIGYKLAARRDLNDPENAIIGAFAGALTGAITTPLDVIKTRLMIQGSANRYKGIVDCVQTIIKEEGPGAFLKGVGPRVLWIGIGGSIFFGVLEGTKRFLAERRPTVAQYTNSEKSKD. 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06379 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 135 217 IPR018108 -
Seca11g06379 331 Pfam Mitochondrial carrier protein 230 315 IPR018108 -
Seca11g06379 331 Pfam Mitochondrial carrier protein 135 215 IPR018108 -
Seca11g06379 331 Pfam Mitochondrial carrier protein 51 128 IPR018108 -
Seca11g06379 331 FunFam S-adenosylmethionine carrier 1 chloroplastic/mitochondrial 53 325 - -
Seca11g06379 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 230 312 IPR018108 -
Seca11g06379 331 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 30 319 - -
Seca11g06379 331 PRINTS Mitochondrial carrier protein signature 67 81 IPR002067 GO:0055085
Seca11g06379 331 PRINTS Mitochondrial carrier protein signature 190 208 IPR002067 GO:0055085
Seca11g06379 331 PRINTS Mitochondrial carrier protein signature 54 67 IPR002067 GO:0055085
Seca11g06379 331 PRINTS Mitochondrial carrier protein signature 235 257 IPR002067 GO:0055085
Seca11g06379 331 SUPERFAMILY Mitochondrial carrier 52 307 IPR023395 -
Seca11g06379 331 Gene3D Mitochondrial carrier domain 53 327 IPR023395 -
Seca11g06379 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 49 126 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06379 Seca-Chr11 164092816 164099742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06379 133 318 Chloroplast and Mitochondria Gene Families AT1G07030 30.890 1.37e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06379 K15111 - gmx:100811130 572.392