Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06356 ATGACAGGGAAGAGAAACCAGAGTAGCCCTGTGGGAAGTCCAACATCAGGGAACATCTCAGATAGTTCTTCAAAAGAGCAAGACAGGTTCCTCCCCATAGCAAACGTGAGCCGAATCATGAAAAGGGCACTCCCAGCTAATGCCAAAATCTCAAAGGAAGCAAAGGAAACAGTCCAAGAATGTGTGTCTGAGTTCATAAGCTTCATCACAGGTGAAGCCTCTGACAAGTGCCAGAGAGAAAAGAGGAAGACAATTAATGGTGATGATCTTCTTTGGGCTATGACAACACTTGGGTTTGAGAACTATGTTGGACCCTTGAAGGGTTATCTCAACAATTACAGGGAAACTGAGGGAGAGAAGAGTTCTATGGCTGGTAAACAAGAAGATCACTCTCCAACAGATCAAACCAATGATGGGGTAGCTGAAATCAACAAATTGGCTAATTCTAAAGCAGAATTTTCAAGTTTCAATGGTGCCTTCTATTCTCAAATGACCCCAAAGAGCTTCCAAGAGATTGGAGGAATCACAGGGTATAGAGAAAGTTCCATGAACAGGGCCATTGCTCAAAGTGCAGTCAATGGTGGTACTGATCCTGATGCAAGTGGTAATAGAATGATGCCAGCCAACCTACGTTATAGGGTTGAATGGTAG 651 0.4363 MTGKRNQSSPVGSPTSGNISDSSSKEQDRFLPIANVSRIMKRALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKGYLNNYRETEGEKSSMAGKQEDHSPTDQTNDGVAEINKLANSKAEFSSFNGAFYSQMTPKSFQEIGGITGYRESSMNRAIAQSAVNGGTDPDASGNRMMPANLRYRVEW. 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06356 216 Gene3D Histone, subunit A 17 154 IPR009072 GO:0046982
Seca11g06356 216 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Seca11g06356 216 SUPERFAMILY Histone-fold 27 133 IPR009072 GO:0046982
Seca11g06356 216 MobiDBLite consensus disorder prediction 1 27 - -
Seca11g06356 216 FunFam Nuclear transcription factor Y subunit B-3 19 143 - -
Seca11g06356 216 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Seca11g06356 216 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Seca11g06356 216 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Seca11g06356 216 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Seca11g06356 216 MobiDBLite consensus disorder prediction 117 138 - -
Seca11g06356 216 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 137 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca11g06356 216 MobiDBLite consensus disorder prediction 119 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06356 Seca-Chr11 163906749 163907399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06356 21 129 CCAAT-HAP3 Transcription Factor Family AT4G14540 84.404 1.05e-65 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca11g06356 CBFD_NFYB_HMF 1.2e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06356 K08065 - gmx:100810059 327.405