Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06348 ATGAGCATGGATTCTCCATCCTCACAGTTTGTTTCCTCAAGAAGGATTGGTGTATATGATCCTATCCACCAAATTACTATGTGGGAAGAAAATTTCAAAAATGATGGTAATTTAAGTGCATCCATGTCCTTAATTGAGGAGATGGACACTAAGTTAGATAATCTGGTTCAGGATGCTTCTCATGGAATATTAGGAACATCTACAAAGTATGGCCAAGAAGCTAACAGACTCACTGATAAGATACAACGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGTTTGAGGAAAAAGGCCTATGTACAGCAATTAGAATCATGCCGTACAAAGCTGATGCAGTTAGAGCTAGAGGTGGATCTTGCAAAACAACAGGGATTGTATACTGGTGGTGGATTGGGTTCAATTAATTTGGGTTTTGCTGGCTCTATGAATCCAGAGATAACAACTTTTAAGATGGAGTATGGACACTGGGTGGAAGAGCAAAATAAACAAATCTTGGACTTGAGAAGTGCTTTAAATGCTCATATCAGTGACACACAACTCGAGACACTTGTACATGACATCATGAACCACTATTTCAAACTCTTCTGCATGAAATCTACTGCTGCAAAAGCTGATGTTTTCTATGTTAAATATGGTTTGTGGAAAACGGCAGCTGAACGGTTTTTCTTGTGGATTGGAGGCTTTCGCCCATCTGAACTTCTAAAGGCTCTGGTCCCTTTGATAGAACCATTAACAGAGCAACAACGGTTTGATGCGTGTAACCTTGAAAAATCATGCCAACAAGCAGAAGATGCCCTTTCACAAGGCATGGAAAAACTCCAGCACTTACTTGCTGAAGCTGTAGCAGCAGGACAAGTCATTGAAGGAACCTATATTCCACAAATGACTATTGCAATGGAGAGGTTGGAAGCTCTTGTGAGCTTTGTGAACCAGGCTGATCATCTACGACAGGAAGCCTAG 969 0.4118 MSMDSPSSQFVSSRRIGVYDPIHQITMWEENFKNDGNLSASMSLIEEMDTKLDNLVQDASHGILGTSTKYGQEANRLTDKIQRRLAQNREAARKSRLRKKAYVQQLESCRTKLMQLELEVDLAKQQGLYTGGGLGSINLGFAGSMNPEITTFKMEYGHWVEEQNKQILDLRSALNAHISDTQLETLVHDIMNHYFKLFCMKSTAAKADVFYVKYGLWKTAAERFFLWIGGFRPSELLKALVPLIEPLTEQQRFDACNLEKSCQQAEDALSQGMEKLQHLLAEAVAAGQVIEGTYIPQMTIAMERLEALVSFVNQADHLRQEA. 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06348 322 Coils Coil 262 282 - -
Seca11g06348 322 Pfam Seed dormancy control 168 241 IPR025422 GO:0006351|GO:0043565
Seca11g06348 322 SUPERFAMILY Leucine zipper domain 80 109 IPR046347 GO:0003700|GO:0006355
Seca11g06348 322 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 83 98 IPR004827 GO:0003700|GO:0006355
Seca11g06348 322 ProSiteProfiles DOG1 domain profile. 149 322 IPR025422 GO:0006351|GO:0043565
Seca11g06348 322 SMART brlzneu 76 136 IPR004827 GO:0003700|GO:0006355
Seca11g06348 322 Pfam bZIP transcription factor 79 108 IPR004827 GO:0003700|GO:0006355
Seca11g06348 322 Gene3D - 79 128 - -
Seca11g06348 322 PANTHER TRANSCRIPTION FACTOR TGA9 3 321 - -
Seca11g06348 322 Coils Coil 99 126 - -
Seca11g06348 322 FunFam BZIP family transcription factor 79 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06348 Seca-Chr11 163836199 163840991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06348 3 321 Calmodulin-binding Proteins AT5G10030 64.486 3.14e-153 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca11g06348 DOG1 2.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06348 K14431 - gmx:100780003 487.648