Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06345 ATGAGGGCTCTCTCTGAGCTCTTCTACCATCTTTATGCCAAGACAATAGTCCTATTCACATACATGCTAATTGAACTTATCCTTATCATTCGGTACCTGAAATCAAATCATACACATGATCCTATTTCCACCACCCAATACCTCAATTTCATTGAAGAGAAGAACCCCACAACTTGCTACACCAAAAGACTGAAGACAGAGCATGTAGACTGCAGGGTATGCTTATCAGAATTTGAGGAAGGGGAAAAAGTTAGGAACTTGAACTGTGAACACACATTTCACAAGGATTGTTTGGACAAGTGGTTCTTGCAAGAGGAGCAATATTGTGCTACTTGCCCACTCTGCAGAAAAAAAGTGTTGCCAGAAGATGTTGTTGCCAACTATCACTTGCTTCAAAATCAGGTAGAAATAGAATATGATGATGGGAGTGATGACCAGTTTCTGGTTTTGTTATCTGCATTAAGGGGTGGTAGCACTTTGCATAGATATCTATGA 495 0.4 MRALSELFYHLYAKTIVLFTYMLIELILIIRYLKSNHTHDPISTTQYLNFIEEKNPTTCYTKRLKTEHVDCRVCLSEFEEGEKVRNLNCEHTFHKDCLDKWFLQEEQYCATCPLCRKKVLPEDVVANYHLLQNQVEIEYDDGSDDQFLVLLSALRGGSTLHRYL. 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06345 164 SMART ring_2 71 115 IPR001841 -
Seca11g06345 164 SUPERFAMILY RING/U-box 50 122 - -
Seca11g06345 164 PANTHER - 1 159 - -
Seca11g06345 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 121 IPR013083 -
Seca11g06345 164 ProSiteProfiles Zinc finger RING-type profile. 71 116 IPR001841 -
Seca11g06345 164 Pfam Ring finger domain 70 116 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06345 Seca-Chr11 163791790 163792284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06345 70 126 C3H Transcription Factor Family AT1G15100 50.877 5.64e-15 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06345 K16282 - gmx:102669811 244.202