Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06339 ATGAAGATGGGATTGAGAGATCGTACCACCAGCATGGAAGATCCAGATGGGACATTAGCTAGTGTTGCCCAATGCATTGAGCAGCTGCGTCAGAGTTCATCTTCTGTGCAAGAAAAAGAGTATTCCTTAAGGCAGTTATTGGAGCTAATAGATATGCGTGAAAATGCTTTTAGTGCTGTTGGATCTCACTCTCAGGCAGTTCCAGTACTGGTTTCCCTTCTCCGCTCGGGTTCACTGAATGTGAAGATACAGGCAGCAACTGTCTTGGGTTCCCTTTGTAAAGAAAATGAACTGAGGTTGAAAGTCTTGCTTGGAGGATGCATTCCTCCATTGCTTGGTCTTCTAAGGTCCAGTTCTACTGAAGGTCAAATTGCTGCTGCAAAGACTATTTATGCTGTCTCTCAAGGTGGTGTAAAAGATCACGTTGGTTCAAAAATATTTTCAACTGAAGGAGTTGTACCAGTGCTCTGGCAGCAGCTGCAAACTGGTCTTAAGGCAGGAAATGTAGTTGAAAGTTTATTGACGGGAGCATTAAAAAATCTCTCCAGCAATACTGAGGGATTCTGGAATGCAACAATACGAGCTGGAGGAGTGGACATATTGTTGAAGTTATTGGCAATGGGGCAGCCTAGCACTTTGGCTAATGTGTGCTATTTGCTTGCTTCTGTAATGATGGAGGATGCATCTGTTTGTTCAAAAGTGTTGACAGCAGAGGTGACAAAACAACTCCTGAAACTATTAGGCCCGGGTAATGATGACTCTGTTAGAGCTGAAGCAGCTGGTACTCTTAAATCTCTATCTGCCCAGTGCAAAGAGGCAAGGCGAGAGATAGCCAATTCCAATGGTATTCCTGCTTTGATCAATGCTACCATCGCTCCTTCCAAAGAATTCATGCAGGGTGAGTGTGCCCAAGCATTACAGGAGAATGCTATGTGTGCTCTAGCAAACATCTCTGGTGGTTTGTCTTATGTCATATCTAGCCTTGGTCAAAGCCTTGAATCATGCACCTCAGCTTCCCAAATTGCTGACACACTAGGAGCTTTAGCCTCAGCTCTTATGATATATGATAACAAGGCAGAATCTACCAGAGCATCTGATCCTTTGGTAGTTGAGCAGACACTACTCAAACAATTTAAACCCCGCTTGCCCTTCCTTGTGCAGGAACGAACCATTGAAGCTCTAGCTAGTTTGTATGGCAATCCTATACTCTCAACTAAGCTTGCAAATTCTGATGCAAAACATTTGCTTGTTGGTTTAATAACAATGGCTGCCAATGAAGTGCAAGATGAGCTTACAAAAGCTCTCTTGACACTATGCAACAATGAAGGCAGTCTATGGCGTGCACTTCAAGGCCGTGAAGGAGTTCAGCTATTAATATCTCTTTTAGGGCTTTCATCAGAACAGCAGCAAGAATGTGCAGTTGCCCTGCTTTGCCTTCTATCTAATGAAAATGATGAAAGTAAATGGGCAATTACTGCTGCTGGTGGTATACCTCCACTTGTTCAAATCTTGGAAACAGGATCTGTGAAAGCAAAGGAAGATTCAGCAACAATCCTTAAGAACCTCTGCAATCATAGTGAAGATATACGTGCTTGTGTGGAAAGTGCCGATGCTGTTCCTGCATTGTTGTGGTTATTGAAGAATGGAAGCACAAATGGGAAGGATATTGCAGCAAAAACATTAAATCATTTAATTCATAAATCTGATACTACAACTATCAGTCAGCTTACAGCATTATTGACTAGTGATCTTCCTGAATCTAAGGTCTATGTTTTGGATGCTTTGAGAAGCATGCTTTCTGTTGCCCCTCTTAACGACATTCTACGTGAAGGTAGTGCTTCCAGTGATGCATTTGATACCATGATAATGTTATTGAGCTCTACCAAAGAAGAAACTCAGGCAAAGTCTGCATCAGCTCTGGCTGGAATTTTTGAAACAAGGAAAGATGTACGTGAAAGTAGCATTGCTGCTAAAACTCTTTGTTCAGCCATGAAATTGCTTAATGTTGAATCTGAAAGTATCCTAATGGGATCCTCACACTGCCTGGCTGCAATATTTCTTTCCATCAAAGAGAACAGGGATGTAGCTACTGTTGCTAGAGATGCATTATCCCCCCTAGTTTCACTAGCTAATTCTTCAGTTTTGGAAGTTGCAGAGATGGCAACGTTTGCTGTAGCAAATCTTATTTTGGATAGTGAAATTGCAGAGAAAGCTGTTGCCGAAGAAGTTATCTTGCCTGCTACCAGAGTATTACGTGAAGGCACAGTTTCTGGAAAAACCCATGCTGCAGCAGCAATTGCTCGCCTCTTACATTCTCGGAAAGTTGATTATGCTGTCACTGATTGTGTGAACCGTGCTGGCACTGTTCTTGCATTAGTTTCGTTTTTAGATTCTTCTGTTAATGGATCTGTTGCCACATCAGAGGCTATAGAAGCACTTGCTATTCTGTCCAGGTCAGAAGGGACCAGTGAACAAATTAAACCAGCATGTGCAGTTTTGGCTGAATTCCCTAAAAGCATAAGCCCAATAGTCCTGTGTATTGTTGATTCACCGCCAATGATGCAAGATAAAACTATTGAGATTTTATCTCGATTATGTAGGGATCAGCCTGTTGTTTTAGGAGACACTGTTGCTTCTTCATCTGGATGTATATCTTCAATAGCTAAGAGGATAATTAGTTCCACAAATGTAAAAGTCAGAATTGGAGGGGCTGCACTTCTTGTTTGTGCTGCAAAAGCAAATCATCAGAGACTGGTGGAAGATCTCAATTTATCAAACTTGTCTACTCACCTGATTCGGTCTCTAGTTGATATTCTTATTTCTGCACAGGCTTCTTTGGATAGTCAGGGTGATGACGATAAGGAATTCATCAGCGTATGCAGGCATACAAAAGAAGAGGCCAACAGTTGTGAATCCAACACTGGCACATCCATTATATGTGGTGCTGACTTAGCTATATGGTTACTGTCTATTCTTGCTTGTCATGATGAAAAAAATAAAATTGCAATAATGGAGGCTGGAGCAATTGATGTTCTCACTGACAGGATCTCAAATTGTTTCTCACAATATTCTCAGATTGACGATAAAGAAGATAGCAGCATGTGGATTTGTGCTTTACTGTTGGCAATATTATTTCAAGATAGAGATATCATACGGGCACATCCAACCACGAAATCTGTGCCAGCACTTGCCAATTTATTGAAGTCAGAGGAATCAGCAAACAAATATTTTGCTGCACAATCAATAGCTAGCCTTGTCTGTAATGGTAGCAGGGGAACACTTTTATCTGTGGCAAATTCTGGGGCAGCAGGTGGACTTATCTCTTTGCTTGGCTGTGCTGATACTGATATACAAGATCTTCTGGAATTGTCAGAGGAATTTTCTTTGGTGCGTTATCCCGATCAAGTGGCTCTAGAGAGGTTGTTTAGAGTTGATGATATAAGAGTTGGTGCCACTTCTCGGAAGGCAATACCTGCCCTAGTTGATCTGCTCAAACCAATTCCAGATCGCCCAGGTGCACCATTCTTAGCACTCGGGCTTTTGACTCAGCTTGGTAAAGATTGTCCATCAAATATGATTGTAATGGTAGAGTCTGGGGCCTTGGAGGCACTTACGAAGTATCTTTCCCTGAGTCCACAAGATGCAACTGAAGAAGCTGCTACAGATCTGCTAGGTATTCTATTTAGCAGTGCTGAGATACGAAAACATGAGTCAGCATTTGGTGCTGTTACTCAACTTGTAGCTGTCCTACGTTTAGGAGGAAGAGGTGCAAGGTATAGTGCTGCAAAAGCCTTGGAAAGTTTATTTTCTGCTGACCACATTAGAAATGCAGAGATTGCTCGACATGCTGTTCAACCTTTGGTGGAGATTCTTAATACTGGTTCAGAAAGGGAGCAGCATGCTGCAATTGCAGCATTGGTTGGGTTACTGAGTGAAAACCCATCAAGAGCACTTGCTGTTGCAGATGTTGAGATGAATGCAGTGGATGTTCTTTGTAGGATCCTTTCATCAAATTGTTCAATGGACCTCAAAGGGGATGCTGCTGAATTATGTTGTGCTCTTTTTGGAAACACAAGGATTAGGTCCACTATGGCTGCTGCTCGCTGTGTTGAACCACTTGTATCTCTCCTTGCAACTGAGTTTAGTCCTGCTCAGCATTCAGTTGTCCGGGCATTAGATAGGCTTGTTGATGATGAGCAACTGGCTGAATTAGTTGCTGCACATGATGCAGTTGTTCCTCTTGTTGGCCTACTGTCTGGTAGGAACTATGTACTTCATGAGGCTGTTTCCAGAGCTCTGGTCAAATTAGGAAAAGACAGACCTGCGTGTAAAATGGAAATGGTGAAAGCTGGAGTTATTGAAAGCATACTTAACATCTTACATGAAGCACCTGATTATTTATGTGCAGCTTTTGCAGAATTGTTGCGTATATTGACCAATAATGCTACCATAGCTAAAGGACCATCGGCTGCTAAAGTCGTTGAACCCTTGTTTTTGTTGCTGACAAGACACGAAGTTGGGCCTGATGGACAGCACAGTGCATTGCAGGTTTTGGTTAATATCTTGGAACATCCACAGTGTCGTGCTGACCATTCATTGACTTCTAACCGAGTTATTGAACCACTTATCCCTTTGCTCGATTCTCCAATATCAGCAGTGCAACAGTTGGCTGCTGAACTTCTTTCACATCTACTTCTAGAAGAACACCTTCAGAAGGATCCGGTGACACAACAAGTAATTGCCCCTCTTATAAGAATTCTTGGTTCTGGTATACACATATTGCAGCAGAGAGCTGTCAAGGCCCTAGTTAGTATTGCGTTAACATGGCCAAATGAAATTGCCAAAGAGGGTGGTGTTATTGAAATTTCCAAAGTGATATTGCAAGCTGATCCTTCCCTTCCCCATGCTTTATGGGAGTCTGCTGCCTCTGTTTTGTCAAGTATTCTGCAATTTAGCTCAGAATTCTACTTGGAAGTGCCTATTGCTGTGTTAGTAAGGTTGCTTCGATCTGGCTCAGAGAGCACGGTTATTGGTGCATTAAATGCTCTTCTGGTGTTGGAAAGTGATGATGGAACTAGTGCAGAAGCTATGGCTGAAAGTGGTGCCATAGAAGCTCTCTTGGAGCTCCTAAGATCTCATCAGTGTGAGGAAACTGCTGCAAGACTCTTAGAAGTATTACTGAACAATGTAAAGATCCGAGAAACGAAGGTTACTAAATCAGCTATCCTACCATTATCCCAGTACCTCTTGGACCCACAAACCCAAGCACAGCAGGCAAGGTTATTGGCAACTTTGGCTCTTGGGGATCTGTTCCAGAATGAGGGTCTTGCTCGAACAAGTGATGCAGTTTCAGCTTGTCGTGCTTTAGTGAATGTGCTTGAAGACCAACCAACAGAAGAAATGAAAGTTGTAGCTATATGTGCTTTGCAAAACCTTGTGATGTACAGCCGATCAAATAAAAGAGCAGTTGCAGAGGCTGGTGGTGTTCAGGTTATATTGGATCTGATAGGTTCAAGTGAACCAGAAACATCTGTTCAGGCTGCAATGTTTGTTAAACTTCTCTTCTCAAATAATACTATTCAAGAGTATGCTTCTAGCGAAACAGTCAGAGCGATCACTGGATTTGATGTGTATAAACTTGGTCTAACAAAGTTTTATGTTCTTGTAGCCACTATTGAAAAAGATTTATGGGCTACTGGAACCGTGAATGAGGAGTATCTGAAAGCTTTAAATTCTCTCTTTAGCAACTTTCCACGATTGAGAGCAACTGAACCAGCTACACTTAGCATTCCCCACCTGGTTACATCCTTAAAGACAGGTTCAGAGGCTTGCCAGGAAGCTGCCTTGGATGCACTTTTTCTGCTTAGACAAGCTTGGTCAGCATGCCCAGCTGAAGTTTCAAGAGCTCAGTCAATTGCAGCTGCAGATGCTATTCCTTTGCTGCAGTACTTAATCCAGTCTGGCCCACCTCGGTTTCAGGAGAAGGCAGAATTTTTATTGCAGTGTTTGCCAGGGACATTGGTGGTGATCATCAAACGTGGTAACAATATGAAGCAGTCTGTTGGAAACCCAAGTGTTTACTGCAAGCTTACACTTGGCAACACTCCACCAAGGCTAACCAAGGTGGTCTCAACTGGCCCTAATCCAGAGTGGGATGAGAGCTTTTCATGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAGCTTCATATTTCATGCAAAAATAAGAGCAAAGTGGGAAAGAGTAAATTTGGTAAAGTTACAATCCAGATTGATCGAGTGGTAATGCTTGGAGCAGTAGCTGGAGAGTACACTCTGTTGCCAGCAAGTAAAAGTGGCCCCCCAAGGAATCTAGAAATAGAATTTCAATGGTCTAACAAAACAAGTGAAAATGAAACAGTGTAG 6402 0.4249 MKMGLRDRTTSMEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRLKVLLGGCIPPLLGLLRSSSTEGQIAAAKTIYAVSQGGVKDHVGSKIFSTEGVVPVLWQQLQTGLKAGNVVESLLTGALKNLSSNTEGFWNATIRAGGVDILLKLLAMGQPSTLANVCYLLASVMMEDASVCSKVLTAEVTKQLLKLLGPGNDDSVRAEAAGTLKSLSAQCKEARREIANSNGIPALINATIAPSKEFMQGECAQALQENAMCALANISGGLSYVISSLGQSLESCTSASQIADTLGALASALMIYDNKAESTRASDPLVVEQTLLKQFKPRLPFLVQERTIEALASLYGNPILSTKLANSDAKHLLVGLITMAANEVQDELTKALLTLCNNEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILETGSVKAKEDSATILKNLCNHSEDIRACVESADAVPALLWLLKNGSTNGKDIAAKTLNHLIHKSDTTTISQLTALLTSDLPESKVYVLDALRSMLSVAPLNDILREGSASSDAFDTMIMLLSSTKEETQAKSASALAGIFETRKDVRESSIAAKTLCSAMKLLNVESESILMGSSHCLAAIFLSIKENRDVATVARDALSPLVSLANSSVLEVAEMATFAVANLILDSEIAEKAVAEEVILPATRVLREGTVSGKTHAAAAIARLLHSRKVDYAVTDCVNRAGTVLALVSFLDSSVNGSVATSEAIEALAILSRSEGTSEQIKPACAVLAEFPKSISPIVLCIVDSPPMMQDKTIEILSRLCRDQPVVLGDTVASSSGCISSIAKRIISSTNVKVRIGGAALLVCAAKANHQRLVEDLNLSNLSTHLIRSLVDILISAQASLDSQGDDDKEFISVCRHTKEEANSCESNTGTSIICGADLAIWLLSILACHDEKNKIAIMEAGAIDVLTDRISNCFSQYSQIDDKEDSSMWICALLLAILFQDRDIIRAHPTTKSVPALANLLKSEESANKYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQDLLELSEEFSLVRYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGLLTQLGKDCPSNMIVMVESGALEALTKYLSLSPQDATEEAATDLLGILFSSAEIRKHESAFGAVTQLVAVLRLGGRGARYSAAKALESLFSADHIRNAEIARHAVQPLVEILNTGSEREQHAAIAALVGLLSENPSRALAVADVEMNAVDVLCRILSSNCSMDLKGDAAELCCALFGNTRIRSTMAAARCVEPLVSLLATEFSPAQHSVVRALDRLVDDEQLAELVAAHDAVVPLVGLLSGRNYVLHEAVSRALVKLGKDRPACKMEMVKAGVIESILNILHEAPDYLCAAFAELLRILTNNATIAKGPSAAKVVEPLFLLLTRHEVGPDGQHSALQVLVNILEHPQCRADHSLTSNRVIEPLIPLLDSPISAVQQLAAELLSHLLLEEHLQKDPVTQQVIAPLIRILGSGIHILQQRAVKALVSIALTWPNEIAKEGGVIEISKVILQADPSLPHALWESAASVLSSILQFSSEFYLEVPIAVLVRLLRSGSESTVIGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARTSDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVILDLIGSSEPETSVQAAMFVKLLFSNNTIQEYASSETVRAITGFDVYKLGLTKFYVLVATIEKDLWATGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEACQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRLTKVVSTGPNPEWDESFSWSFESPPKGQKLHISCKNKSKVGKSKFGKVTIQIDRVVMLGAVAGEYTLLPASKSGPPRNLEIEFQWSNKTSENETV. 2134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06339 2133 Gene3D - 1764 2003 IPR011989 -
Seca11g06339 2133 Pfam C2 domain 2005 2096 IPR000008 -
Seca11g06339 2133 Pfam Armadillo/beta-catenin-like repeat 63 93 IPR000225 GO:0005515
Seca11g06339 2133 Pfam Armadillo/beta-catenin-like repeat 484 523 IPR000225 GO:0005515
Seca11g06339 2133 SMART arm_5 1525 1566 IPR000225 GO:0005515
Seca11g06339 2133 SMART arm_5 776 818 IPR000225 GO:0005515
Seca11g06339 2133 SMART arm_5 227 268 IPR000225 GO:0005515
Seca11g06339 2133 SMART arm_5 1143 1186 IPR000225 GO:0005515
Seca11g06339 2133 SMART arm_5 1689 1728 IPR000225 GO:0005515
Seca11g06339 2133 SMART arm_5 53 94 IPR000225 GO:0005515
Seca11g06339 2133 SMART arm_5 95 135 IPR000225 GO:0005515
Seca11g06339 2133 SMART arm_5 1440 1480 IPR000225 GO:0005515
Seca11g06339 2133 SMART arm_5 1188 1229 IPR000225 GO:0005515
Seca11g06339 2133 SMART arm_5 1357 1397 IPR000225 GO:0005515
Seca11g06339 2133 SMART arm_5 1398 1438 IPR000225 GO:0005515
Seca11g06339 2133 SMART arm_5 484 524 IPR000225 GO:0005515
Seca11g06339 2133 SMART arm_5 270 319 IPR000225 GO:0005515
Seca11g06339 2133 SMART arm_5 692 730 IPR000225 GO:0005515
Seca11g06339 2133 SMART arm_5 1270 1311 IPR000225 GO:0005515
Seca11g06339 2133 SMART arm_5 526 566 IPR000225 GO:0005515
Seca11g06339 2133 SMART arm_5 1568 1607 IPR000225 GO:0005515
Seca11g06339 2133 SMART arm_5 1816 1856 IPR000225 GO:0005515
Seca11g06339 2133 SUPERFAMILY ARM repeat 984 1119 IPR016024 -
Seca11g06339 2133 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 3 2126 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Seca11g06339 2133 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2005 2111 IPR035892 -
Seca11g06339 2133 Gene3D - 1639 1763 IPR011989 -
Seca11g06339 2133 Gene3D - 571 775 IPR011989 -
Seca11g06339 2133 SUPERFAMILY ARM repeat 15 646 IPR016024 -
Seca11g06339 2133 SUPERFAMILY ARM repeat 620 939 IPR016024 -
Seca11g06339 2133 CDD C2 2007 2097 - -
Seca11g06339 2133 SUPERFAMILY ARM repeat 1539 2003 IPR016024 -
Seca11g06339 2133 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 495 537 IPR000225 GO:0005515
Seca11g06339 2133 SMART C2_3c 2006 2102 IPR000008 -
Seca11g06339 2133 Gene3D - 1137 1324 IPR011989 -
Seca11g06339 2133 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 2005 2126 - -
Seca11g06339 2133 Gene3D - 776 1131 IPR011989 -
Seca11g06339 2133 Gene3D - 375 570 IPR011989 -
Seca11g06339 2133 Gene3D - 1325 1628 IPR011989 -
Seca11g06339 2133 Gene3D - 11 374 IPR011989 -
Seca11g06339 2133 SUPERFAMILY ARM repeat 1145 1527 IPR016024 -
Seca11g06339 2133 Gene3D C2 domain 2004 2133 IPR035892 -
Seca11g06339 2133 ProSiteProfiles C2 domain profile. 1986 2103 IPR000008 -
Seca11g06339 2133 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1339 1573 - -
Seca11g06339 2133 Coils Coil 256 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06339 Seca-Chr11 163735769 163747309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06339 455 640 U-box Gene Family AT3G46510 32.500 6.95e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06339 - - gmx:100794002 3654.76