Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06337 ATGGCACTCTCATGCTCACTCTCTTCGGGCTTAAGCGCTCCTTACCGTTCTCCTTCTTGTGTTTGGAAATCGAACTTGGAGAGATGTAAAGCGCCTAATAAGATATTATGTTCGGCACATAATGATAAGAATCGATTTGTTGGAATTGGTGTTGGGTTTGTGGCGGCTTGGATGGTGGGTTTAACGGCGTTGAATGCGGATGCGACGAGAATCGAATACTACGCTACCGTGGGAGATCCTCCTTGTGAGCTCAATTACGTTAAGTCTGGTCTCGGTTACTGCGATATTGCTGAGGGCTTCGGTGACGAAGCTCCTCTTGGGGAGCTTATCAATATTCATTATACTGCAAGATTCGCTGATGGAATAGTCTTTGATAGCAGTTATAAACGTGGTAGGCCTCTCACCATGCGCATTGGTGTTGGCAAGGTAATCAGGGGACTGGATCAGGGGATTTTAGGGGGTGAAGGAGTACCTCCAATGCGGATAGGTGGGAAACGCAAGCTGATGATTCCTCCACTGTTAGCATATGGCCCTGAACCTGCAGGGTGCTTCTCAGGTGATTGCAATATACCTGGTAATGCCACTCTTCTGTATGATATTAAGTTCGTTGGTCTTTATTCGGGCAATGCAAAGTGA 636 0.4686 MALSCSLSSGLSAPYRSPSCVWKSNLERCKAPNKILCSAHNDKNRFVGIGVGFVAAWMVGLTALNADATRIEYYATVGDPPCELNYVKSGLGYCDIAEGFGDEAPLGELINIHYTARFADGIVFDSSYKRGRPLTMRIGVGKVIRGLDQGILGGEGVPPMRIGGKRKLMIPPLLAYGPEPAGCFSGDCNIPGNATLLYDIKFVGLYSGNAK. 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06337 211 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 4, CHLOROPLASTIC 30 211 IPR044183 GO:0009507
Seca11g06337 211 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 104 202 IPR001179 GO:0003755
Seca11g06337 211 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 107 206 IPR001179 GO:0003755
Seca11g06337 211 SUPERFAMILY FKBP-like 86 204 - -
Seca11g06337 211 Gene3D - 80 205 IPR046357 GO:0003755
Seca11g06337 211 FunFam Peptidylprolyl isomerase 79 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06337 Seca-Chr11 163725153 163728053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06337 83 203 Calmodulin-binding Proteins AT3G25230 36.585 7.76e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06337 K01802 - gmx:100500547 332.028