Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06318 ATGGCAACAACTATAGATATGTACAACTACAATAGCAACATCACACATGATTTCTTAGATCCGTACAATGAAGAGTTGATGAGAGCACTTGAACCTTTTATGAAAAGTGATTCATCTTCTTCTCTCTCAATGGAATCACACCCTTCTTCCTCCATCTCTTATTCTCCACTTTCTCATCCCAGCCTCTGTTTTTCCCCTGTTTTCTCAACCCAAACCAGCTCCATCGGGCTCAACCAACTCACCCCATCACAAATCCTTCAGATTCAAGCACAATTCCACACATGGCAACAACAACAACAACAAAACATCGCTAACATAGCCGCAGCTTCACTCCAACGCCACAAACCAACAACTCATTCACAGAGCTTACTCACCCCAAAGCCCGTTTCCATGAAGCACGTTGGCACTCCCACAGCAAAACCCACGAAACTCTACCGTGGGGTGAGACAGAGACATTGGGGGAAGTGGGTCGCTGAGATCAGACTCCCAAAAAACCGCACCCGACTCTGGCTTGGCACATTTGATACAGCAGAGGAAGCAGCTTTGGCTTATGACAATGCAGCATTTAAGCTTAGAGGTGAATTTGCACGCCTTAATTTCCCTCATCTTCGGCACCAAGGAGCACATGTTTTCGGTGAATTTGGTGATTACAAGCCCCTTCCTTCCTCGGTTGATTCCAAGCTCCAAGCCATTTGTGAAAGCTTGGCCATTACTCAAAAACAGAGCAAAAACAGAGAACACTCTGTTCAAGATGTAAAGCCTGTGGTGGCACAATCCAACAGTGAATTGGTTTGTCCTCCAGAGTTTGAGGATTTTAAGGTGGAAAATCCAATGTTGTCTGATGACTCTTCACATGGTTCGTCTTCTCCTGAATCGTGTATTACTTTCTTGGATTTCTCGGATTGTAAGCAGTGGGATGAAGCAGAGAATTTTGGGTTGGAGAAGTACCCTTCTGTGGAGATTGATTGGGCAGCTATATGA 981 0.4495 MATTIDMYNYNSNITHDFLDPYNEELMRALEPFMKSDSSSSLSMESHPSSSISYSPLSHPSLCFSPVFSTQTSSIGLNQLTPSQILQIQAQFHTWQQQQQQNIANIAAASLQRHKPTTHSQSLLTPKPVSMKHVGTPTAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAFKLRGEFARLNFPHLRHQGAHVFGEFGDYKPLPSSVDSKLQAICESLAITQKQSKNREHSVQDVKPVVAQSNSELVCPPEFEDFKVENPMLSDDSSHGSSSPESCITFLDFSDCKQWDEAENFGLEKYPSVEIDWAAI. 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06318 326 FunFam Ethylene-responsive transcription factor 2 143 202 - -
Seca11g06318 326 SUPERFAMILY DNA-binding domain 144 202 IPR016177 GO:0003677
Seca11g06318 326 CDD AP2 143 203 IPR001471 GO:0003700|GO:0006355
Seca11g06318 326 SMART rav1_2 144 207 IPR001471 GO:0003700|GO:0006355
Seca11g06318 326 ProSiteProfiles AP2/ERF domain profile. 144 201 IPR001471 GO:0003700|GO:0006355
Seca11g06318 326 MobiDBLite consensus disorder prediction 118 140 - -
Seca11g06318 326 Gene3D AP2/ERF domain 144 202 IPR036955 GO:0003700|GO:0006355
Seca11g06318 326 PRINTS Ethylene responsive element binding protein signature 145 156 IPR001471 GO:0003700|GO:0006355
Seca11g06318 326 PRINTS Ethylene responsive element binding protein signature 167 183 IPR001471 GO:0003700|GO:0006355
Seca11g06318 326 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 326 - -
Seca11g06318 326 Pfam AP2 domain 145 194 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06318 Seca-Chr11 163573269 163574249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06318 1 326 AP2-EREBP Transcription Factor Family AT1G78080 47.727 7.53e-81 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca11g06318 AP2 2.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06318 K09286 - gmx:100818839 347.436