Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06317 ATGACGCAGCAGAATGTGGTTGTGTCCGACCCAAAATCAGGGATCAACAGGGCTATTACCGTTGCACAAAAGCCACCCGTGGCTGCTCCTGGAGGCTACATTCCCATTCCAAGGAGGAGGATTTTGAAGAACCTTGAAATCAATGCATGGGTTGACTCCATCAGAGCCTCTTCTCCTACCCATGCCAAATCCACTCCTTCTCTGGCTGAAGAACACAGCTCTTGGATTCTTCACCATCCATCAGCATTAGACATGTTTGAGCAAATTATGGATGTATCCAAGGGGAAACAAATAGTCATGTTCCTTGACTATGATGGTACCTTATCACCAATCGTTGATGACCCTGATCGTGCTTTCATGTCTGATTCGATGAGAAGAACCGTGAGGAAACTTGCAAGGTATTTTCCTACTGCTATAGTTACCGGCAGATGCAGAGACAAGGTATACAATTTTGTTCGCTTGGCTGAGCTGTATTATGCTGGAAGCCATGGTATGGATATTAAGGGGCCAACAAGAGACTCTAAATACAATAAAGACAAAACAGCAGAGGCAGTTCTTTTTCAACCTGCCAGTGAATTTCTTCCCATGATAGATGAGGTGTATGAAAAATTGGTTGAGAAAACAAAATCAACTCCTGGTGCCAGAGTGGAGAACAACAAGTTCTGCCTCTCTGTTCATTTTCGCTGTGTTGATGAAAAGAAATGGAGTGAACTGGCACAGCAAGTGAAATCAGTGTTGAAAGACTACCCGAAGCTTCGTCGTAGCCAAGGAAGAAAGGTACTAGAGATTCGTCCCGATATTAAATGGGACAAAGGGAAGGCCCTGGAATTTCTGTTAGAGTCACTTGGATTTGCCAACTGTAACGATGTCTTTCCTGTATATATTGGTGATGATAAAACCGATGAAGATGCATTCAAGAAATTAAGAGACAGAGGACAAGGTTTGGGGATTCTTGTATCGAAATTTCCAAAGGACACTACTGCATCATACTCTCTACAGGAACCCAATGAGGCAAGTCTATATATATATATAATTTCATTAGTGATGGAGTTTCTTCAACGTTTGGTGGAGTGGAAACAAGTGTCCCTGAGAACACGTTCCCGGGTGTAA 1110 0.4306 MTQQNVVVSDPKSGINRAITVAQKPPVAAPGGYIPIPRRRILKNLEINAWVDSIRASSPTHAKSTPSLAEEHSSWILHHPSALDMFEQIMDVSKGKQIVMFLDYDGTLSPIVDDPDRAFMSDSMRRTVRKLARYFPTAIVTGRCRDKVYNFVRLAELYYAGSHGMDIKGPTRDSKYNKDKTAEAVLFQPASEFLPMIDEVYEKLVEKTKSTPGARVENNKFCLSVHFRCVDEKKWSELAQQVKSVLKDYPKLRRSQGRKVLEIRPDIKWDKGKALEFLLESLGFANCNDVFPVYIGDDKTDEDAFKKLRDRGQGLGILVSKFPKDTTASYSLQEPNEASLYIYIISLVMEFLQRLVEWKQVSLRTRSRV. 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06317 369 Gene3D - 180 266 - -
Seca11g06317 369 FunFam Trehalose 6-phosphate phosphatase 190 266 - -
Seca11g06317 369 NCBIfam HAD-IIB family hydrolase 100 311 IPR006379 -
Seca11g06317 369 CDD HAD_TPP 99 335 - -
Seca11g06317 369 NCBIfam trehalose-phosphatase 96 356 IPR003337 GO:0003824|GO:0005992
Seca11g06317 369 FunFam Trehalose 6-phosphate phosphatase 196 365 - -
Seca11g06317 369 Gene3D - 100 332 IPR023214 -
Seca11g06317 369 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 31 363 IPR044651 GO:0004805|GO:0005992
Seca11g06317 369 FunFam Trehalose 6-phosphate phosphatase 98 185 - -
Seca11g06317 369 SUPERFAMILY HAD-like 99 343 IPR036412 -
Seca11g06317 369 Pfam Trehalose-phosphatase 101 335 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06317 Seca-Chr11 163521053 163523941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06317 100 355 Trehalose Biosynthesis Gene Families AT1G60140 26.217 2.35e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06317 K01087 - gmx:100794430 615.535