Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06290 ATGGCCGATACCAGGCGCTGCGTTCCCTCCAATCAATTAGATATTGAGCAGATTATTTTAGAAGCACAACATCGATGGCTACGTCCAGCAGAAATTTGTGAAATTCTCGGGAATTACAAGAAATTTCGAATTTCCCCAGAGCCTGAACATATGCCACCAAGTGGTTCACTTTTCCTATTTGATCGGAAGGTGCTGAGATACTTTAGAAAGGATGGCCATAACTGGAGGAAGAAAAAAGATGGAAAAACGGTGAGGGAAGCTCATGAGAGACTGAAGGCTGGAAGTGTGGATGTGTTGCACTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTTCAAAGACGCACTTACTGGCTGCTTGAGGAGGAACTCTCACACATTGTTCTTGTCCATTATCGGGAAGTGAAGGGAACCAAGACAAATTTTAGATTTGCTAAAGAAAATGAAGAGTCTCTTCCTTATGCTCAACAAACTTACAAAATTATGCCCAACACAGAAATGGATACTTCTTTATCTTCTAGTCTTCATCCACATAGTTACCAGGTTCCTTCACAAACTATAGATACAAGCATGAACAGTGCTCAAGCATCAGAATATGAAGAAGCTGAATCAGCATTTAATAACCATGCAAGTTCTGAATTCTACTCTTTCCTTGAGCTGCAACGCCCTGTTGTTGAAAAGATTAAAGCTCATATCACTGATTCTTACTGTCCTATGCCACTCAAAGGTAAATTTCTTCATAGTACTAATTGTAACATTGAAATTGTTACAGATGATCAAGAAAAGTTGCCTGTCATTCCTGGGGTGAATTATATCCCACTCAGTCAAGCGAATAAAATCAAAGACATTCATAATGTTGGATTGACATATGAACCCTCAAAATTCCTTGGCTTTTCATCGTGGGAATCTACATTAGAAAGTAATGCTGGAAGTCATCATGTCCCTTTTCAGCCTTCATTTCCTGAAACACAATCCAACAATACAGGAATCAATAGCAGTCCCTCTCCAGGAGATGAGATAATGGCGCAACATTTTACCATCAGCATTGCTAAACAGCATGGGAATGGAAGTCTCATACAAGCTGAAGGAAGTTGGCAGGCTTCTGGATTTAATTCTTTAAGCATATCCAATTGCCCCGTAGATGCTGTGTATTCAGGCTCACAATGCGAGGTTAGTTATAACAACTGTGAGCAGGAAGTTAATGGAGTTGATTTTCAAAAATCCATGGAACAGTGCCTTCTACACCCACACAAACTAAACAAGGTTCTTATGCAAAATGGCCCTCGAGAAAAACTTCTAGAAGCAAAAGAGAAACTAAAATCAGATCTAGAGGTCAATAGAAGCCTGGATGGAGTAGAAGACAGTTATCTCACTTTAAAGAAGACTCTGTTAGATGGCTGTCCAGCAGAAGAGGGTCTTAAGAAGCTTGACAGTTTCAACCAGTGGATGAGTAAAGAACTTGGAGATGTAGAAGAATCAAATAAGCAATCCACTTCTGGTGCTTATTGGGATGAAGTTGAAAGTGAAAATGGGGTTGGCAGTACAGCTATTCCTTCCCAAGTGCACCTGGACACCTATGTACTGGATCCATCTGTTTCCAATGATCAGCTTTTTAGCATTATTGATTATTCCCCAAGCTGGACATTTGAAGGCTCAGAAGTTAAGGTTCTCATTTCAGGACGATTCTTAAGGACTCTACATGACGCAGAACACTGTAATTGGTCATGCATGTTTGGTGAGGTAGAAGTGCAAGCAGAGATCATTGGGAATGGTGTTCTTTGTTGTCATACTCCTCCACACAAGGCTGGGAGGGTTCCTTTCTATGTAACTTGTTCCAATAGGTTAGCATGTAGTGAAGTGCGAGAATTTGATTTCCGGGTTAACCATACTCGACAAGTCAACACTGCAGGTGACAACAGAGGAAGCACTTCTGATACTTTTAAAATACGATTTGGAGAACTGTTGTCCCTGGAGCATGCCTTCCCTCAGTGTTTAGATTCAATTAGTGTGAGTGAGAAATCTCAACTGATAAGTAAAATCAGTTATTTGCTGATGAAGGATGATGATTGGGACAAGTTGCTGAAACTTACTATAGAGAAAGATTTTTCTGCAGAAATTTTACAGGAGCAGCTGCTTGAAAATCTTCTGAAAGATAAGTTACTGGCATGGCTCCTTCAGAAAATAACTGAAGATGGGAAAGGCCCTAATGTATTAGATGATGGTGGCCAAGGTGTGCTTCATTTTTCAGCTGCTCTTGGCTATGATTGGGCCCTAGAACCCACAATAGTTGCTGGTGTCAACGTGAACTTTCGTGATATAAATGGATGGACTGCTCTTCATTGGGCAGCATTTTGTGGCAGGGAGCGCACAGTTGCTTCCCTCATCTCTCTTGGCGCAGCACCCGGAGCACTGACTGATCCATGCCCTGAATATCCTTCTGGTAGAACACCAGCTGACCTAGCTTCTGCAAATGGACACAAAGGAATTGCGGGGTATCTTGCAGAATCTTTCCTAAGTGCACACCTCAAATCTCTTGATCTGAACAGGGACGTGGGTGAAAAATCTGGAGCAGAAGTAGTCCAAAGAGTCCAAGAACAAAACACTGCTCAAGTTAATGATGAGGACCTGTCATATGAACTGTCATTGAAAGATTCACTGGCTGCGGTGTGCAATGCCACCCAAGCTGCTGCTCGTATTCATCAAGTTTTCAGAGTGCAATCATTCCAGAGAAAACAACTGAAGGAATATGGTGATGACAGATTTGGAATATCTGATGAACATGCTCTTTCACTTGTAACAGTGAATGTGAAACCGCACAAGTCTAGACTAAGTGATGAACCTGTCCATGCTGCTGCAACAAGAATCCAGAACAAGTTCCGCAGTTGGAAGGGCAGAAAAGAATTTCTGATGATTCGACAACGAATAGTAAAAATTCAGGCTCATGTGAGAGGACACCAGGTTAGGAAAAACTGTGGGAAGATAATTTGGTCTGTTGGAATATTGGAGAAGGTTATATTGCGTTGGCGTCGAAAAGGTAGTGGTTTGCGTGGATTTAAATCAGAGGCAATTGCTGAAGGAACTATGGAACAAGGTGTATCTTCCACAGAGGATGACTATGATTTCTTAAAAGAAGGCAGGAAGCAAACAGAGAAAAGGTTGGAGAAAGCCCTGGCTAGGGTGAAGTCAATGGTTCAGTATCCAGAGGCAAGAGACCAATACCATAGGCTGTTGAATGTAGTAACTGAGATCCAAGAAAATCAGGTAAAGCATGATAGGTTTTTTAACAATTCAGAAGAAACAAGAGAATTCGATAACCTCATTGATCTTGAAGCATTGTTGGATGAAGATACCTTCATGCCTACAGCCACTTAG 3372 0.4143 MADTRRCVPSNQLDIEQIILEAQHRWLRPAEICEILGNYKKFRISPEPEHMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEENENFQRRTYWLLEEELSHIVLVHYREVKGTKTNFRFAKENEESLPYAQQTYKIMPNTEMDTSLSSSLHPHSYQVPSQTIDTSMNSAQASEYEEAESAFNNHASSEFYSFLELQRPVVEKIKAHITDSYCPMPLKGKFLHSTNCNIEIVTDDQEKLPVIPGVNYIPLSQANKIKDIHNVGLTYEPSKFLGFSSWESTLESNAGSHHVPFQPSFPETQSNNTGINSSPSPGDEIMAQHFTISIAKQHGNGSLIQAEGSWQASGFNSLSISNCPVDAVYSGSQCEVSYNNCEQEVNGVDFQKSMEQCLLHPHKLNKVLMQNGPREKLLEAKEKLKSDLEVNRSLDGVEDSYLTLKKTLLDGCPAEEGLKKLDSFNQWMSKELGDVEESNKQSTSGAYWDEVESENGVGSTAIPSQVHLDTYVLDPSVSNDQLFSIIDYSPSWTFEGSEVKVLISGRFLRTLHDAEHCNWSCMFGEVEVQAEIIGNGVLCCHTPPHKAGRVPFYVTCSNRLACSEVREFDFRVNHTRQVNTAGDNRGSTSDTFKIRFGELLSLEHAFPQCLDSISVSEKSQLISKISYLLMKDDDWDKLLKLTIEKDFSAEILQEQLLENLLKDKLLAWLLQKITEDGKGPNVLDDGGQGVLHFSAALGYDWALEPTIVAGVNVNFRDINGWTALHWAAFCGRERTVASLISLGAAPGALTDPCPEYPSGRTPADLASANGHKGIAGYLAESFLSAHLKSLDLNRDVGEKSGAEVVQRVQEQNTAQVNDEDLSYELSLKDSLAAVCNATQAAARIHQVFRVQSFQRKQLKEYGDDRFGISDEHALSLVTVNVKPHKSRLSDEPVHAAATRIQNKFRSWKGRKEFLMIRQRIVKIQAHVRGHQVRKNCGKIIWSVGILEKVILRWRRKGSGLRGFKSEAIAEGTMEQGVSSTEDDYDFLKEGRKQTEKRLEKALARVKSMVQYPEARDQYHRLLNVVTEIQENQVKHDRFFNNSEETREFDNLIDLEALLDEDTFMPTAT. 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06290 1123 Gene3D - 701 870 IPR036770 -
Seca11g06290 1123 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Seca11g06290 1123 ProSiteProfiles Ankyrin repeat region circular profile. 774 799 - -
Seca11g06290 1123 SUPERFAMILY E set domains 540 625 IPR014756 -
Seca11g06290 1123 Coils Coil 1039 1059 - -
Seca11g06290 1123 ProSiteProfiles IQ motif profile. 949 977 IPR000048 GO:0005515
Seca11g06290 1123 ProSiteProfiles Ankyrin repeat profile. 774 806 IPR002110 GO:0005515
Seca11g06290 1123 FunFam Calmodulin-binding transcription activator 2 703 850 - -
Seca11g06290 1123 Gene3D - 946 994 - -
Seca11g06290 1123 SMART CG_1_2 18 136 IPR005559 GO:0003677
Seca11g06290 1123 Pfam IQ calmodulin-binding motif 949 968 IPR000048 GO:0005515
Seca11g06290 1123 Pfam IQ calmodulin-binding motif 973 990 IPR000048 GO:0005515
Seca11g06290 1123 Pfam IPT/TIG domain 540 614 IPR002909 -
Seca11g06290 1123 Gene3D Immunoglobulins 532 629 IPR013783 -
Seca11g06290 1123 FunFam Calmodulin-binding transcription activator 2 947 995 - -
Seca11g06290 1123 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 940 997 IPR027417 -
Seca11g06290 1123 SMART iq_5 970 992 IPR000048 GO:0005515
Seca11g06290 1123 SMART iq_5 947 969 IPR000048 GO:0005515
Seca11g06290 1123 SMART ANK_2a 813 842 IPR002110 GO:0005515
Seca11g06290 1123 SMART ANK_2a 774 803 IPR002110 GO:0005515
Seca11g06290 1123 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Seca11g06290 1123 ProSiteProfiles IQ motif profile. 971 995 IPR000048 GO:0005515
Seca11g06290 1123 SUPERFAMILY Ankyrin repeat 728 836 IPR036770 -
Seca11g06290 1123 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 13 1086 - -
Seca11g06290 1123 FunFam Calmodulin-binding transcription activator 2 533 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06290 Seca-Chr11 163312014 163321349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06290 59 1119 CAMTA Transcription Factor Family AT2G22300 48.747 0.0 853
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Seca11g06290 CG-1 1.8e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06290 K21596 - gmx:100798875 1761.89