Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06284 ATGGAGTCCCTTCGTGTTCCCCTTCACAACCTCTCCGAACTCAGCACCCGAATGGACTCTCTCCATCGCTTCATATCCGATTCCATCAACACCAACACTCTCCTCACCAAGCAACACATGGACACTGTCTCCAACGAGATCGTATCCGCCATTCGCCACGTCATCATCAACGCCGCCGCCATCGTCTCCGCCGAAGCACCCCCGGAAACGGTTCCTCCTAAACAACCAACGTTTGACTCAAAAGTCGAGATTGTCGGCGACAACAAGGAACACTGTGAAATCGTGGAGTTCGACGCGATGGAGTTGTTGGCGAAGCACTTACACTTTTGCAAGGTTTGCGGGAAAGGCTTCACGCGCGACGCGAACTTGCGTATGCACATGCGCGCGCACGGGGAACAGTACAAGGCCCCAGAAGCGTTAGCGTCAAAGAAGCCGCGTGGGGAAACGCGCTTAACGGCGACGTTGTTTTCTTGCCCTTTCGAGGGTTGCAAGAGGAACAAGCTACATAGGAAGTTCAGGCCACTGATGTCGGTGTTTTGTTTAAAGAACCATTTCAAGAGAAGCCATTGCCCGAAAACGTACACGTGCGATCGGTGCCGGAAGAAGAGTTTTGCGGTGCTTTCGGACTTGAAGAGTCACGCGAAGCAGTGCAGGGGAGAGTCCACGTGGAAGTGCTCGTGTGGAACCACGTTTTCAAGGAAGGAGAAGCTGTTTGGTCACGTGGCGCTGTTTGAGGGGCACGTGCCGGCGCTTGAGGTTGGTGAAGAGGATAGAGGGGAACCGATGGCGGCGGCTGAAGGGGAAGGTGCGGAGGGACCACCGTTGAGGAAGGAAAGTGATGAGTTGCCTGAAGGATTCTTTGATGGTTTGGATGAGTTTGGGTTTGGCTCACCTTTATTGGTTTGA 906 0.5386 MESLRVPLHNLSELSTRMDSLHRFISDSINTNTLLTKQHMDTVSNEIVSAIRHVIINAAAIVSAEAPPETVPPKQPTFDSKVEIVGDNKEHCEIVEFDAMELLAKHLHFCKVCGKGFTRDANLRMHMRAHGEQYKAPEALASKKPRGETRLTATLFSCPFEGCKRNKLHRKFRPLMSVFCLKNHFKRSHCPKTYTCDRCRKKSFAVLSDLKSHAKQCRGESTWKCSCGTTFSRKEKLFGHVALFEGHVPALEVGEEDRGEPMAAAEGEGAEGPPLRKESDELPEGFFDGLDEFGFGSPLLV. 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06284 301 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
Seca11g06284 301 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 86 257 IPR044300 GO:0010044|GO:0010447
Seca11g06284 301 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Seca11g06284 301 MobiDBLite consensus disorder prediction 255 283 - -
Seca11g06284 301 SUPERFAMILY beta-beta-alpha zinc fingers 105 132 IPR036236 -
Seca11g06284 301 Gene3D Classic Zinc Finger 151 245 - -
Seca11g06284 301 FunFam Zinc finger 45-like 107 131 - -
Seca11g06284 301 SMART c2h2final6 194 215 IPR013087 -
Seca11g06284 301 SMART c2h2final6 108 130 IPR013087 -
Seca11g06284 301 SMART c2h2final6 156 189 IPR013087 -
Seca11g06284 301 Pfam Zinc-finger of C2H2 type 109 128 - -
Seca11g06284 301 SUPERFAMILY beta-beta-alpha zinc fingers 192 241 IPR036236 -
Seca11g06284 301 Gene3D Classic Zinc Finger 108 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06284 Seca-Chr11 163268493 163269398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06284 93 272 C2H2 Transcription Factor Family AT1G34370 53.514 1.39e-67 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca11g06284 zf-met 0.0019 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06284 - - gmx:100798348 376.711