Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06283 ATGTTACCTTGTGTAGAATATTTTACTTTAGGACCTATGAGATGTGTTCCCTTGTTTTTGACACACATCATTACATTCCACTTTTTTACCTGTGCTCCGTATTGCAGTTTCACTGGAAATAAGTTGATTTGTGGTGTGAATTATCGTCAACCTTGTGCATCTAATAATGCAGATGAAGGCTCATCACATAAACCAAAAATTGGCCTCCTAATTGGCATAATTATAGGGTTATTTGCTATAACTTTTCTTGGTGGTCTGCTGTTCTTATGGTGCAAGGGTAGACACAAGGGCTACAAGCGTGAAGTTTTTGTAGATGTTGCAGGCGAAGTTGATCGGCGAATTGCATTTGGTCAACTAAAAAGATTTGCATGGAGAGAACTACAGATAGCTACAGACAACTTCAGTGAGAAAAATGTTTTAGGACAAGGAGGCTTTGGAAAGGTTTATAAAGGTGTTCTTGCTGATAACACAAAAGTTGCTGTCAAAAGGTTAACTGATTATGAAAGTCCTGGGGGAGATGCAGCTTTCCAGCGTGAAGTTGAGATGATAAGTGTAGCTGTGCATAGGAACCTGTTACGGCTGATTGGGTTTTGTACTACCCCAACTGAGCGCCTCTTGGTTTATCCCTTCATGCAGAACTTAAGTGTTGCCTATCGGCTACGAGAACTCAAACCTGGGGAACCTGTTTTGGACTGGCCTACAAGAAAACGAGTGGCTTTGGGAACAGCCCGTGGCCTAGAATATCTTCATGAGCATTGCAATCCCAAGATTATTCATCGGGATGTGAAGGCAGCTAATGTATTACTAGATGAAGATTTTGAGGCAGTTGTTGGCGACTTTGGTTTGGCAAAGTTAGTGGATGTTCGAAAGACTAATGTGACAACTCAAGTTCGCGGGACCATGGGCCACATAGCTCCTGAATATTTGTCAACTGGAAAGTCTTCAGAGAGGACTGATGTTTTTGGTTATGGGATTATGCTTTTGGAGCTTGTTACAGGTCAACGAGCAATTGACTTTTCACGTTTGGAAGAGGAAGATGATGTGCTATTGCTTGACCATGTTAAGAAATTAGAACGGGAGAAAAGACTAGATGCTATTGTTGACCGCAACCTAAATAAAAATTACAACATACAAGAGGTGGAAATGATGATACAAGTTGCATTACTCTGCACACAAGCAACCCCAGAGGACCGTCCACCAATGTCTGAAGTTGTAAGAATGCTAGAAGGAGAAGGGTTAGCTGAAAGGTGGGAGGAATGGCAGCATGTGGAGGTCAATCGGAGGCAAGAATACGAGAGATTACACAGAAGATTTGACTGGGGAGAAGATTCGGTTTATAATCAAGATGCCATTGAGTTGTCTGGTGGAAGATAA 1374 0.4185 MLPCVEYFTLGPMRCVPLFLTHIITFHFFTCAPYCSFTGNKLICGVNYRQPCASNNADEGSSHKPKIGLLIGIIIGLFAITFLGGLLFLWCKGRHKGYKREVFVDVAGEVDRRIAFGQLKRFAWRELQIATDNFSEKNVLGQGGFGKVYKGVLADNTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRELKPGEPVLDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLDAIVDRNLNKNYNIQEVEMMIQVALLCTQATPEDRPPMSEVVRMLEGEGLAERWEEWQHVEVNRRQEYERLHRRFDWGEDSVYNQDAIELSGGR. 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06283 457 Gene3D Phosphorylase Kinase; domain 1 103 210 - -
Seca11g06283 457 FunFam Somatic embryogenesis receptor-like kinase 1 211 428 - -
Seca11g06283 457 SMART serkin_6 134 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06283 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Seca11g06283 457 FunFam Somatic embryogenesis receptor kinase 1 103 210 - -
Seca11g06283 457 ProSitePatterns Protein kinases ATP-binding region signature. 140 162 IPR017441 GO:0005524
Seca11g06283 457 ProSiteProfiles Protein kinase domain profile. 134 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06283 457 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 116 419 - -
Seca11g06283 457 Pfam Protein kinase domain 135 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06283 457 SUPERFAMILY Protein kinase-like (PK-like) 114 409 IPR011009 -
Seca11g06283 457 Gene3D Transferase(Phosphotransferase) domain 1 211 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06283 Seca-Chr11 163250606 163255385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06283 33 457 Receptor kinase-like Gene Family AT5G10290 84.000 0.0 721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Seca11g06283 Pkinase 3.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06283 - - gmx:100793416 783.482