Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06272 ATGGAAGAACGGTATGAGATAATCAAAGATATTGGATCAGGGAACTTTGGTGTCGCAAAGCTGGTAAGGGAGAAATGGAGTGGTCAGTTATACGCTGTCAAGTTTATTGAGAGAGGCTTCAAGATTGATGAGCACGTGCAAAGGGAAATCATAAATCATAGATCCTTGAAGCATCCTAATATCGTTAGATTTAAAGAGGTGTTACTTACTCCAACTCATCTAGCTATAGTCATGGAATATGCAGCAGGAGGAGAATTATTTGAAAGAATATGCAGTGCTGGTAGATTTAGTGAGGACGAGGCAAGATATTTCTTCCAGCAGCTGATTTCTGGAGTCAGCTATTGCCATTCAATGGAAATTTGCCATAGAGATCTTAAGCTGGAAAACACACTTTTAGATGGAAGCTCAGCACCACGGCTCAAAATCTGTGACTTTGGTTACTCAAAGTCATCTGTTCTGCACTCCCAGCCAAAATCAACAGTAGGAACCCCTGCCTATATTGCACCAGAGGTCTTGTCAAGAAGGGAATATGATGGGAAGGTTGCAGATGTATGGTCTTGTGGGGTGACTTTATATGTGATGCTAGTTGGCGCTTATCCTTTTGAAGACCCAGAAGACCCAAGAAACTTCAGAAAAACACTTCAGCGAATTCTTAGTGTCCACTATTCTATTCCAGACTATGTACGTATCAGTAAAGAGTGCAGGCATCTTTTATCTCGAATATTTGTAGCCAACCCAGAGAAGAGAATCACTATACCAGAAATTAAAATGCATCCGTGGTTCCTAAAGAACTTGCCACTAGAATTTATGGACGAGGGTGATGGTGGGTTACAAAATGATGTGAATGATTCATCTTCTCAGAGCATTGAAGAAATATTGTCCATAATTCAAGAGGCTAGGAAGCCAGGGGAGGGCCCAAAAGTTGGTGGGCAGTTTGTTGGGGGAAGCATGGATCTTGATGATATGGATGCAGATGCTGACATCGATGAGATTGATACAAGCGGTGATTTTGTCTGTGCATTCGGGAGAGGAGGGAGATCACGCACTCAAAGAAAGCATTTTCGTCAGAACAGAGAGAATGTGTGGAAGCGTTCTAAATCAGATCCTGATCCTTCTTCAACCTCCGAAACTCAAAATCCAACGTGGACTCCATTCGCCACCTATTACAAGGAGCAGGGGATAGTGGACCTGCAAGAGTGGGATGAATTCGTCGCACTTCTCAGAACTCCCTTGCCTGCAACCTTTAGAATCAATTCTAGTAGCCAGTTTTCTGATGACATTCGTTCTCAACTGGAGAATGACTTCGTGCATTCTCTTCGTGATGAGGTTGTTGAAGGAGTTGAGACAGAGGCTATTCGACCGTTGCTGTGGTATCCTGGGAATTTCGCTTGGCATTCAAATTTTTCTCGAATGCAGCTGAGGAAGACCCAAACACTTGAGAGGTTCCATGAATTCTTAAAGCTAGAAAATGAAATTGGAAATATCACAAGACAGGAAGCTGTCAGTATGGTTCCTCCCCTCTTCTTGGACGTGCATTCAGATCATTTTGTACTTGATATGTGTGCTGCACCAGGTTCAAAAACTTTCCAATTGCTTGAGATTATACACCAATCAACTAAATCAGGATCACTGCCTGATGGAATGGTTGTAGCAAATGATCTTGATGTCCAAAGATGCAATCTTCTCATCCACCAAACAAAAAGAATGTGCACAGCCAACCTAATTGTTACTAATCACGAAGCACAGCACTTCCCAGGGTGCCGTTTAAACAGGAATTATGAAAAGATGGAGTTGGATCACCATATTGGCCAACTGTTATTTGACCGTGTTCTGTGTGATGTCCCATGTAGTGGAGATGGTACACTTCGAAAGGCACCTGATCTCTGGAGGAAATGGAACACAGGGATGGGAACAGGGCTTCACAGCCTACAAGTTTTAATTGCTATGCGAGGTATATCTTTACTCAAAATTGGTGGAAGAATGGTCTATTCAACGTGCTCAATGAATCCTATTGAGAATGAAGCTGTGGTTGCAGAGGTTTTGCGGAGGTCTGGAGGATCGGTTGAACTTGTTGATGTCTCTAGTGAGCTTCCACAACTTATTCGCCGGCCTGGCCTCAAGAGATGGAAGGTATTTGACAAGGGCACTTGGTTAGCCTCTTACAAAGATGTTCCTAAGTTTCGTAGAAGTGTAATTCTTCCCAGTATGTTTCCTTTAGGCAGAGGCAATCTGGATCTTGTTGACAGTAGTAATTGTGGTGTTAATGGAAATGCTGAAGATGGTATTCAAGCAGTAGAGAATCCTGTGATGCCTGAGTCTGCTGAGGAAGTTTCTGATTTTCCTATAGAGCATTGCATGAGGATAGTGCCTCATGATCAGAACACTGGAGCATTCTTCATTGCTGTACTGCAAAAAGTTTCTCCCCTGCCAGCTATTCCTGAAAAACCTAAAAAAGAAATTGATGAGCAATATGTAGAACCAGCAAACCAGGGTCTTGAGGATGCACAAGTACCACATATTAATTCATCAGAAAGTGCACATGAAGAAGTTTTAAAAGCAGTTTCAGAGGAAAATGTAAATGACAATGAACCCATTACAGAAGATTTGGAAGTTAGTCCTGTTACATGTGAAGAACAGAATTCCAAGGAAACGGAAGAGCCCCCTAATGTACAAAACATGGTAAAACCCGTTCCAGGCAAAAGAAAGCTACAAATTCAAGGCAAATGGAGAGGTGTTGACCCGGTTGTCTTTTTCAAAGATGAAGCAATTATTAATAGTATAAGGGATTTTTATGGAATCGACGAGCATTTTCCATTCAATGGTCACCTTGTTACAAGAAACAATGATCCAAGTCATGTGAAAAGAATTTACTATATCTCCAAGTCAGTCAAGGATGTTCTTGAGTTGAACTTCTCAGTTGGGCAGCAACTTAAAATAACCTCAATTGGCCTGAAGATGTTTGAAAGACAAACAGCACGACAAGGTTGCTCTGCACCATGTGCTTTCCGGATATCATCCGAAGGATTGCCCCTTATTCTCCCATACATAACCAAACAAATTCTACAGGCATCTCCCGTAGACTTCAAGCATCTTTTGCAGAACAAAGATGTAAAATTTGAAGATTTTGATGATGCCGAGTTTGGTGAAAAGGCAGCTAACCTTATGCCAGGCTGTTGCGTGGTAATTCTGGGTAAAGGGAACAGAGTTGCTACAGAGTCCCTCAAAGTGGATGAGTCAACAATAGCCATTGGATGCTGGAGAGGTAGGTCGAGATTGACAGTGATGGTCACTGCAATGGACTGCCAAGAACTGCTTGAAAGGCTTTTAATACGTCTAGACACAGAAAAGGACTCCTCCGGGAATGTGGACAAATCTTCTAATGATGTGGGAGGTGAAGTACAGCCTGTACAGGAGTTGAATGGTAAAAATGATAATGATGTGAAATCTACTGTAAGTTAG 3459 0.4212 MEERYEIIKDIGSGNFGVAKLVREKWSGQLYAVKFIERGFKIDEHVQREIINHRSLKHPNIVRFKEVLLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGSSAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLSRREYDGKVADVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTLQRILSVHYSIPDYVRISKECRHLLSRIFVANPEKRITIPEIKMHPWFLKNLPLEFMDEGDGGLQNDVNDSSSQSIEEILSIIQEARKPGEGPKVGGQFVGGSMDLDDMDADADIDEIDTSGDFVCAFGRGGRSRTQRKHFRQNRENVWKRSKSDPDPSSTSETQNPTWTPFATYYKEQGIVDLQEWDEFVALLRTPLPATFRINSSSQFSDDIRSQLENDFVHSLRDEVVEGVETEAIRPLLWYPGNFAWHSNFSRMQLRKTQTLERFHEFLKLENEIGNITRQEAVSMVPPLFLDVHSDHFVLDMCAAPGSKTFQLLEIIHQSTKSGSLPDGMVVANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRLNRNYEKMELDHHIGQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNTGMGTGLHSLQVLIAMRGISLLKIGGRMVYSTCSMNPIENEAVVAEVLRRSGGSVELVDVSSELPQLIRRPGLKRWKVFDKGTWLASYKDVPKFRRSVILPSMFPLGRGNLDLVDSSNCGVNGNAEDGIQAVENPVMPESAEEVSDFPIEHCMRIVPHDQNTGAFFIAVLQKVSPLPAIPEKPKKEIDEQYVEPANQGLEDAQVPHINSSESAHEEVLKAVSEENVNDNEPITEDLEVSPVTCEEQNSKETEEPPNVQNMVKPVPGKRKLQIQGKWRGVDPVVFFKDEAIINSIRDFYGIDEHFPFNGHLVTRNNDPSHVKRIYYISKSVKDVLELNFSVGQQLKITSIGLKMFERQTARQGCSAPCAFRISSEGLPLILPYITKQILQASPVDFKHLLQNKDVKFEDFDDAEFGEKAANLMPGCCVVILGKGNRVATESLKVDESTIAIGCWRGRSRLTVMVTAMDCQELLERLLIRLDTEKDSSGNVDKSSNDVGGEVQPVQELNGKNDNDVKSTVS. 1153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06272 1152 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 387 806 IPR029063 -
Seca11g06272 1152 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Seca11g06272 1152 MobiDBLite consensus disorder prediction 348 381 - -
Seca11g06272 1152 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 403 806 IPR001678 GO:0008168
Seca11g06272 1152 ProSitePatterns NOL1/NOP2/sun family signature. 607 618 IPR018314 GO:0003723|GO:0008168
Seca11g06272 1152 MobiDBLite consensus disorder prediction 354 370 - -
Seca11g06272 1152 SMART serkin_6 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06272 1152 SUPERFAMILY Protein kinase-like (PK-like) 3 262 IPR011009 -
Seca11g06272 1152 FunFam Serine/threonine-protein kinase SRK2E 81 269 - -
Seca11g06272 1152 MobiDBLite consensus disorder prediction 1116 1152 - -
Seca11g06272 1152 PRINTS RNA (C5-cytosine) methyltransferase signature 788 805 IPR023267 GO:0001510
Seca11g06272 1152 PRINTS RNA (C5-cytosine) methyltransferase signature 518 528 IPR023267 GO:0001510
Seca11g06272 1152 PRINTS RNA (C5-cytosine) methyltransferase signature 658 674 IPR023267 GO:0001510
Seca11g06272 1152 PRINTS RNA (C5-cytosine) methyltransferase signature 608 620 IPR023267 GO:0001510
Seca11g06272 1152 Gene3D Transferase(Phosphotransferase) domain 1 81 267 - -
Seca11g06272 1152 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 350 1121 IPR023267 GO:0001510
Seca11g06272 1152 FunFam S-adenosyl-L-methionine-dependent methyltransferase superfamily protein 378 722 - -
Seca11g06272 1152 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Seca11g06272 1152 ProSiteProfiles Protein kinase domain profile. 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06272 1152 Pfam 16S rRNA methyltransferase RsmB/F 508 693 IPR001678 GO:0008168
Seca11g06272 1152 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 977 989 IPR023270 GO:0016428
Seca11g06272 1152 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 464 485 IPR023270 GO:0016428
Seca11g06272 1152 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 692 711 IPR023270 GO:0016428
Seca11g06272 1152 Gene3D Vaccinia Virus protein VP39 379 805 IPR029063 -
Seca11g06272 1152 CDD STKc_SnRK2 4 260 - -
Seca11g06272 1152 MobiDBLite consensus disorder prediction 873 895 - -
Seca11g06272 1152 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Seca11g06272 1152 Pfam Protein kinase domain 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06272 1152 MobiDBLite consensus disorder prediction 1123 1152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06272 Seca-Chr11 163129925 163145748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06272 4 271 CBL-interacting serine-threonine protein kinases AT4G24400 43.165 3.58e-63 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Seca11g06272 Pkinase 2.3e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06272 K15334 - gmx:100808859 1399.03