Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06266 ATGAAGAGACTTGGCAGCTCCGATTCTTTGGGTGCTCTCATGACAATTTGTCCACCAACAGAGGAACAAAGTCCAAGGAACAACCACGTGTATGGTAGGGATTTTCAGTCCATGTTGGAAGGACTTGATGAGGAAGGGTGTGTTGAAGAATCAGGGCATCAATCTGAGAAGAAAAGGAGACTAAGTGTTGATCAGGTCAAGGCTTTGGAGAAGAACTTTGAGGTAGAAAACAAGCTTGAACCAGAAAGGAAGGTGAAACTTGCTCAAGAGCTTGGCTTGCAACCAAGACAAGTAGCTGTTTGGTTCCAAAACCGTCGAGCTAGATGGAAAACCAAGCAATTGGAAAGAGACTATGGTGTTCTGAAAGCCAATTATGACACACTTAAACTTAACTATGACACCCTCCAACGAGACAATGAATCCTTACTCAAAGAGGTAGAAAATAATCAAATTGATAATTTCACTTCACTCTTTTATGAACCCTTTTGGAAAAGAGCATTAATTAATAATTATTTGGATTTGTGTTGGCAGATTAAGGAATTGAAATCAAGGCTTGAAGAGGAAAACACTGAAAGTGGTGCTTCAGTGAAAGAAGAGATGATGACAACCCTGCAAGACTCAGAATACAAAATGAACACAGTTTCTGAAACCCCAATTCCTGGATCCGATTCTAAGGATTTGAGTTATGAATGCTTCAACAATAGTTGTGATGGGGTGGGAGGAGTAGAAGGAGGAGGAGTTTCAGCGCTCTTCCCTTTGGACTTCAATAAAGATGGTTCTTCAGATAGTGACTCAAGCGCAATATTGAATGAAGAGAATATTAACAATAGCCCAAACGCGGCGATTTCTTCATCTGGGGTTCTTCAAAGTCACAACCTTTTGATGTCTCCTGGGTCGTCTTCGCTCAAATTCAATTGCTCCTCATCGTCATCGCCTTCATCGATGAACTGCTTCCACTTCCAGAAGCAGTACCAAACACACTATGTGAAGATGGAAGAGCACAATTTTCTCAGTGCAGATGAGGCCTGCAATTTCTTCTCAGATGAACAAGCACCGACCCTGCAGTGGTACTGTTCGGAAGAGTGGAGTTAA 1092 0.4194 MKRLGSSDSLGALMTICPPTEEQSPRNNHVYGRDFQSMLEGLDEEGCVEESGHQSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDTLKLNYDTLQRDNESLLKEVENNQIDNFTSLFYEPFWKRALINNYLDLCWQIKELKSRLEEENTESGASVKEEMMTTLQDSEYKMNTVSETPIPGSDSKDLSYECFNNSCDGVGGVEGGGVSALFPLDFNKDGSSDSDSSAILNEENINNSPNAAISSSGVLQSHNLLMSPGSSSLKFNCSSSSSPSSMNCFHFQKQYQTHYVKMEEHNFLSADEACNFFSDEQAPTLQWYCSEEWS. 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06266 363 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Seca11g06266 363 Gene3D - 28 113 - -
Seca11g06266 363 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Seca11g06266 363 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Seca11g06266 363 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Seca11g06266 363 FunFam Homeobox-leucine zipper protein HAT5 50 114 - -
Seca11g06266 363 CDD homeodomain 57 113 IPR001356 GO:0003677
Seca11g06266 363 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 48 335 IPR045224 GO:0003700
Seca11g06266 363 SUPERFAMILY Homeodomain-like 39 114 IPR009057 -
Seca11g06266 363 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Seca11g06266 363 SMART HOX_1 55 116 IPR001356 GO:0003677
Seca11g06266 363 Pfam Homeobox associated leucine zipper 112 147 IPR003106 GO:0006355|GO:0043565
Seca11g06266 363 Coils Coil 125 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06266 Seca-Chr11 163023295 163024607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06266 1 359 Homeobox Transcription Factor Family AT2G22430 43.968 4.99e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca11g06266 Homeodomain 3.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06266 K09338 - gmx:100796213 462.996