Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06264 ATGGCTTTCCATCATAGAAAACTGTTATTCCAGAATCATCACAACCATGGTAACATTAGCCCAACACCTTCCCCTCATGAATCACCAGTTTCACAGTTTCCACTACCTTCAACATTACCCATCCCCACCCCTGAAATAAACCATGTCCATATTCTTCAAATCGCTGTAATCGCCATGGGTTGCATGGTTGGTGTTACCATGTTTCTCTGCACAGTTTCTGTTATCCTAAGAAGCTATTATTACTCAAGGAGACGTAACCATAACCATAACCATAGCAGAAGTAACTCACCAATATTGTTCGATGTAAATGGAGATGGAGATAGAGATTCTCGTTTTTCAGATAATGATGAGATGGAGCGTGTGATTGATCACCCTGTATGGTTTATCCGTACAGAGGGACTCCAACAATCAGTTATAGATTCCATCACTGTTTTCAAATATAGAAAAGATGAAGGACTCATAGAAGGAACAGAGTGCTCTGTTTGTCTCGGTGAGTTTCAACAGGACGAGAGTTTGAGATTATTGCCTAAGTGTGACCACGCTTTTCACATCCTTTGCATTGACACGTGGCTCAGATCACATAAAAATTGTCCCTTGTGTCGTGCAACAGTGGTTAATGTTAATGGTGATGGTGGTGGTGCAGATTTTAGGGTTACAGTTACTAATCAGAGTGATTCAAGCGTTTCTGGTGAGACTCTGAACCAAGAGGGTCTGATTGAGGATTTTGATGACGTGGCAGGGTTAGATGAAAGTGAAAGTAGTGTAATGAGGTTTGTTGGAGATGATGATTCTGGTGTATCATCTAGTGACATTTTACCTAATTTGTTGGTAGAGGAAATTCAGCATGTGAAGAGGTCAATTTCTATGGATTCATCTTCAACGGTATTTCATGATTTAAATTCTGATAGATGGAACTCAGAGAATGACTTAAACTTTGGTGATAAAATGAATTCAAGTAGCAAGGATTTGAGTGTGGCTATTGCTGCTAAGAATGGTAGTGGAAGTTCAACTGTTTGCAAAGTGGCTTCAATTGGACGTGCATTGCAGAAGAGGCCTAGATCTTTTTCAAATAACACTAAATTCTTATTTTCTAAACATAGCAGGAGCCAGAGTTCAAGTCTTCCTTTGTAA 1131 0.3961 MAFHHRKLLFQNHHNHGNISPTPSPHESPVSQFPLPSTLPIPTPEINHVHILQIAVIAMGCMVGVTMFLCTVSVILRSYYYSRRRNHNHNHSRSNSPILFDVNGDGDRDSRFSDNDEMERVIDHPVWFIRTEGLQQSVIDSITVFKYRKDEGLIEGTECSVCLGEFQQDESLRLLPKCDHAFHILCIDTWLRSHKNCPLCRATVVNVNGDGGGADFRVTVTNQSDSSVSGETLNQEGLIEDFDDVAGLDESESSVMRFVGDDDSGVSSSDILPNLLVEEIQHVKRSISMDSSSTVFHDLNSDRWNSENDLNFGDKMNSSSKDLSVAIAAKNGSGSSTVCKVASIGRALQKRPRSFSNNTKFLFSKHSRSQSSSLPL. 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06264 376 MobiDBLite consensus disorder prediction 14 36 - -
Seca11g06264 376 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 51 208 IPR044675 -
Seca11g06264 376 Pfam Ring finger domain 158 201 IPR001841 -
Seca11g06264 376 SMART ring_2 159 200 IPR001841 -
Seca11g06264 376 ProSiteProfiles Zinc finger RING-type profile. 159 201 IPR001841 -
Seca11g06264 376 SUPERFAMILY RING/U-box 143 207 - -
Seca11g06264 376 FunFam RING-H2 finger protein ATL54 134 207 - -
Seca11g06264 376 CDD RING-H2_EL5-like 158 201 - -
Seca11g06264 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 210 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06264 Seca-Chr11 162990618 162991748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06264 54 207 C3H Transcription Factor Family AT1G72220 44.872 1.25e-39 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06264 - - lja:Lj4g3v2731650.1 319.701