Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06263 ATGAATCATGCAATCTTGGTTAATCATCTTGACTACAGGGGTTTACCTCAAGAAAAAGTTCTGCGCTATGCCTTCTTCAATTCTTACTTTAAGACTGATCAGAAGTATCCTCTAGATGATGCAATTCTGGCATATGTATATTCAAATGGATTCAGGTTTCAGCCATCCAAGTGGAAAAAGATAGATGAAATTCCTTTTGACTTTATAAGAAGAAGAGTGTCTATCATCATAGAAACAGAAGACAGACACTCTCAGTTCTTTGGCAGGTTCATGGTAACAAAAGGAGCACTGTTGGAAGTCATGAGAGTTTGTTCCTTTATTGAGAATTTTGACAAAGATGAAATTTCCACCTTCTCTTCAGATGACTATCAGAGGATTTTAAATCTGTCAGAAGAATTGAGCAATGAAGGATTAAGGGTTATAGGAGTAGCTATAAAGAAGCTGGAAATGCAGCAAACATGTGAAACAAGTAATGGAAGCAAGGGGGGTTTGGAGGATATTGAAAGAGACATGATGTTTCTTGGCCTCATAACATTTTTTGACCCTCCTAAGGACACAGCAAAGCAAGCACTATGGCGTTTAGCTGAGAAGGGAGTGAAAGCAAAAGTTTTAACAGGTGACTCTCTCAGCTTGACAACAAGGGTATGCAGGGAAGTTGGCATAAAGACCACTCATGTAATAACAGGACCTGAGCTAGAGCAACTTGACCAAGACACTTTCCATGAGACTGTTAAAAGAGCCACAGTACTAGCTCGTCTCACCCCAACTCAGAAACTCCGAGTGGTACAATCCTTGCAAACAATAGGAAACCATATTGTTGGATTCTTAGGAGATGGAGTGAATGATTCACTTGCTTTGGATGCTGCACATGTAAGCATTTCAGTGGACTCAGGGGTTGCAATTGCCAAAGACATGGCAGATATTATCTTACTTGAGAAAGATCTCAATGTGCTTGTTGCAGGAGTGGAGCATGGTAGACTCACCTTTGGCAACACAATGAAATATGTAAAGATGTCAGTTATTGCTAACTTGGGAAGTGTCATTTCACTTCTCATAGCATCACTGTGCCTCAAGTATGAGCCTTTAACTTCAAGACAGCTTCTTACTCAGAATTTCATCTACAGTGTGGGACAGATAGCCATCCCTTGGGACAAGATGGATGAAGAGTATGTGAAGACTCCTCACAAGTTATCAGAGAAAGGCTTGCCTATGTTCATATTGTGGAATGGACCAGTGTGCACTCTCTGTGATGGGGCAACACTTATGTTTCTTTGGTTCTATTACAAGGCTTATGATGATGTGGATGAGAAATTTTTCCATTCAGCTTGGTTCATTGAGGGTCTTCTCATGCAAACCCTTATTATCCACTTGATCAGGACAGAGAAAATCCCTTTCATACAGGACATTGCTTCTTGGCCTGTGATTTTCTCCACTCTTGTTGTATCTGCAATTGGGATTGCATTTCCAATCACACCTATTGGAAAGGTCATGGGATTCATACTTCTACCCCTCTCATATTTTGGATTTTTGGCTGTTCTTTTTGTGGGATATTTTATAGTTGGCCAGGTGGTTAAGAGACTTTACATAAAAGTTTATAAGAGATGGCTTTGA 1611 0.401 MNHAILVNHLDYRGLPQEKVLRYAFFNSYFKTDQKYPLDDAILAYVYSNGFRFQPSKWKKIDEIPFDFIRRRVSIIIETEDRHSQFFGRFMVTKGALLEVMRVCSFIENFDKDEISTFSSDDYQRILNLSEELSNEGLRVIGVAIKKLEMQQTCETSNGSKGGLEDIERDMMFLGLITFFDPPKDTAKQALWRLAEKGVKAKVLTGDSLSLTTRVCREVGIKTTHVITGPELEQLDQDTFHETVKRATVLARLTPTQKLRVVQSLQTIGNHIVGFLGDGVNDSLALDAAHVSISVDSGVAIAKDMADIILLEKDLNVLVAGVEHGRLTFGNTMKYVKMSVIANLGSVISLLIASLCLKYEPLTSRQLLTQNFIYSVGQIAIPWDKMDEEYVKTPHKLSEKGLPMFILWNGPVCTLCDGATLMFLWFYYKAYDDVDEKFFHSAWFIEGLLMQTLIIHLIRTEKIPFIQDIASWPVIFSTLVVSAIGIAFPITPIGKVMGFILLPLSYFGFLAVLFVGYFIVGQVVKRLYIKVYKRWL. 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06263 536 SUPERFAMILY Calcium ATPase, transmembrane domain M 325 533 IPR023298 -
Seca11g06263 536 NCBIfam HAD-IC family P-type ATPase 241 355 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca11g06263 536 Gene3D - 246 529 - -
Seca11g06263 536 Gene3D - 4 186 IPR023299 GO:0000166
Seca11g06263 536 SUPERFAMILY HAD-like 167 324 IPR036412 -
Seca11g06263 536 PRINTS Magnesium-transporting ATPase signature 26 39 IPR006415 GO:0015444|GO:0015693|GO:0016020
Seca11g06263 536 PRINTS Magnesium-transporting ATPase signature 384 397 IPR006415 GO:0015444|GO:0015693|GO:0016020
Seca11g06263 536 PRINTS Magnesium-transporting ATPase signature 334 349 IPR006415 GO:0015444|GO:0015693|GO:0016020
Seca11g06263 536 PRINTS Magnesium-transporting ATPase signature 439 460 IPR006415 GO:0015444|GO:0015693|GO:0016020
Seca11g06263 536 PRINTS Magnesium-transporting ATPase signature 352 363 IPR006415 GO:0015444|GO:0015693|GO:0016020
Seca11g06263 536 PRINTS Magnesium-transporting ATPase signature 489 510 IPR006415 GO:0015444|GO:0015693|GO:0016020
Seca11g06263 536 PRINTS Magnesium-transporting ATPase signature 404 420 IPR006415 GO:0015444|GO:0015693|GO:0016020
Seca11g06263 536 Pfam haloacid dehalogenase-like hydrolase 143 289 - -
Seca11g06263 536 PANTHER CATION TRANSPORTING ATPASE 35 527 - -
Seca11g06263 536 Pfam Cation transporting ATPase, C-terminus 360 527 IPR006068 -
Seca11g06263 536 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 9 186 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06263 Seca-Chr11 162985930 162988366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06263 56 441 Primary Pumps ATPases(2) AT1G10130 26.700 2.32e-35 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06263 K01531 - pvu:PHAVU_002G260400g 946.036