Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06262 ATGGGAAGAACCAAAGTTTCCACCCTCTTCTCTGATTCTTCTAATAACCACCACTACACACTTCCTCTTTCCAACCCCATAAGCCAAACTCTTTTGAACAGGCCAAATATCCATAAAAATTCATTCCCTTCTTCACTCTTAGGATTATTCAAGCGCCTCATCTATGGAAGGAAAGTTGATGGAGGCTCACGAACTGAAGAAGAAGAGAAAGTCTATTCTTGGTTATACACATTGGCCCAGTCTGATAAGGACTTGGCATTCGAGTATGTTAGGTCCACAGAAAGAGGCTTAACTTTCACTGAAGCAGAGAGGAGGCTAAGGGAAAATGGCCCAAATGTTCCACTTGAGTATTCTTTTCCAAGATGGTGGCATCTTCTATGGAATGCTCTTTTTCATCCTTTCAATATCATTCTGATTGTTTTATCTTCTCTGTCATTCATTGCTCGTGATAATCCAAATGGATGCATCATGCTCATATTAGTTTTTATCAGTGTCACACTCCGTTTCTTTCAGGAATACAGCAGCTCAAAAGCAGCAATGAAGCTTTCAGAGTTTGTAAGATGCCCAATAAAAGTTCAAAGATGTGCTGGTAGAGTTGTGCAGAGAGAATTAATAGTTCAAGTTGATCACAGGGATATAGTTCCAGGTGACATTGTGATTTTTGAACCTGGGGACCTCTTTCCTGGAGATGTCAGATTGTTATCTTCAAAACATCTTGTTGTAAGCCAGGCCTCACTAACTGGGGAATCTTGGACCACTGAGAAAACTGCCGATGTCAGAGAAGATCACAACACCCCTTTATTAGATTTAAAGAACATATGCTTTATGGGCACAAACGTGGTATCAGGTGCTGGAACAGGTTTAGTTATTTCAACTGGATCCAATACTTACATGAGCACCATGTTTTCAAAAGTTGGGAAGAAGAAGCCACCAGATGACTTTGAAAAGGGTCTCAAATGGATATTTTATTTGCTTATTTCAGTTATGCTAGTAGTTGTTACAATTGTGTTTGTAACTGATTACACTGCATCTCAAGATTTAAGCGTAAGTATTCTCTTTGCAATCTCAGTAGCATCTGCCCTCAATCCTCAGATGCTTCCACTCATCATTAACACATGCCTTGCAAAAGGAGCACTTGCAATGGCTAAAGACAGATGTATAGTAAAAAGTTTAACAGCTATACGCGAGATGGGTTCAATGTAA 1203 0.3965 MGRTKVSTLFSDSSNNHHYTLPLSNPISQTLLNRPNIHKNSFPSSLLGLFKRLIYGRKVDGGSRTEEEEKVYSWLYTLAQSDKDLAFEYVRSTERGLTFTEAERRLRENGPNVPLEYSFPRWWHLLWNALFHPFNIILIVLSSLSFIARDNPNGCIMLILVFISVTLRFFQEYSSSKAAMKLSEFVRCPIKVQRCAGRVVQRELIVQVDHRDIVPGDIVIFEPGDLFPGDVRLLSSKHLVVSQASLTGESWTTEKTADVREDHNTPLLDLKNICFMGTNVVSGAGTGLVISTGSNTYMSTMFSKVGKKKPPDDFEKGLKWIFYLLISVMLVVVTIVFVTDYTASQDLSVSILFAISVASALNPQMLPLIINTCLAKGALAMAKDRCIVKSLTAIREMGSM. 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06262 400 Pfam E1-E2 ATPase 198 383 - -
Seca11g06262 400 Gene3D - 128 399 - -
Seca11g06262 400 SUPERFAMILY Calcium ATPase, transmembrane domain M 91 398 IPR023298 -
Seca11g06262 400 SMART Cation_ATPase_N_a_2 77 150 IPR004014 -
Seca11g06262 400 SUPERFAMILY Calcium ATPase, transduction domain A 198 303 IPR008250 -
Seca11g06262 400 Gene3D - 95 306 - -
Seca11g06262 400 Pfam Cation transporter/ATPase, N-terminus 88 145 IPR004014 -
Seca11g06262 400 PANTHER SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT ALPHA 78 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06262 Seca-Chr11 162981846 162985648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06262 66 398 Primary Pumps ATPases(2) AT4G00900 25.067 2.26e-22 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06262 K01531 - gmx:100795153 652.514