LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g06248	ATGTTAGGGGAAGAGGGTAACGACCGCGCCGCCGGTCACCGGAGGACATATTCGCGTTCAGTTTCATGGACTGACCGGTCTCCGGCTACCCGGAAGCCTCCACCGGCGGCGAATAACAAGCCAAGACCGTTGCTGCCACCCCTTCAGCCTCTTTCCATCAACAAGCGTAGCGTTGAGGAGTGGCCTAGTGCTGGATCTGATGATCTTGGAGTTTGGCCACTTGCACAGACTCCAAGAGGGTCCATCACAGATTCGGGTCGACCCGGGAAGGAGTTTCAGCTGAAAAAGGACAAATTGGCCTTCTATGACAAGGAGTGTTCGAGAATTGCAGAGCATGTGTACCTGGGAAGTGACACGGTGGCGAAGAACCATGAGCTTCTGAGGCAGAAAGGGATCACTCATGTGCTCAACTGTGTTGGGTTTGTTTGTCCTGAGTATTTCAAGAGTGATTTTGTGTACAAGACACTTTGGTTGCAGGATAGTCCTTCAGAGGACATCACTAGTATTCTCTATGATGTGTTTGATTACTTTGAGGATGTTAGACAGCAAGGTGGGCGTGTCCTTGTTCATTGTTGTCAAGGGGTTTCTAGATCAACCTCTTTGGTGATTGCTTATCTCATGTGGAGGGAAGGACAGAGCTTTGAAGATGCTTTTCAGTATGTGAAGAATGCAAGGGGTGTTACTAATCCAAACATGGGTTTTGCTTGTCAACTCTTGCAGTGTCAGAAAAGGGTACATGCTATGCCTGCTAGTCCAAATTCTATTCTTAGGATGTATAGGATGGCTCCTCATTCTCCTTATGACCCTCTTCATTTGGTCCCCAAAATGGTTAACCAGCCTTGTGCTAAAGCACTTGATTCTCGTGGGGCGTTTATTATCCATGTTCCTTCTGCTATATATGTATGGATTGGGAAAATTTGTAGTTCTGTCATGGGTTGTAATGCAAGGTCAGCAGCCATTCAGGTCATCCGTTATGAGAAGGCAACGGGTCCAATTCTTAGCATCCATGAAGGTGAAGAGCCGCTGGAGTTTTGGGTTGCTCTTTCCAACCAAGGAGAGGTCAAGAAGGATGTGGTGTTGCCATCTGAGGAAAGGATGGAGATTGATGATATTGATGTTTCAGTTGATATGGGAATTGGTCCAAGGAAAGTTGATGAATATGATTTGGATTTTGGGATTTTTCACAAGGCACTTGCTGGTGGGGTTGTTCCACCTTTTTCTGTATCTAATACTGGATCAGAAACTTGCCTTCCTGCTAGAGAAAATGGTTGGGGAAGACTGAGGAGGAAGCTTGCTTGTGGTATCATGAAAGGCTTTTTCACATCCTCCAAATGCTGTGATACAACCTTATCCAAAGATGAATCAAGTGTGAACATGGAAGAAGAAAATCAACATTCTGTAGTTGTTCATCCTTTGCCACCATCATCAAACTCTCTTTGTGTTTCATCTGATTCCTTTGAATATCTTCTAGATAAAAACTCCAACAGGGCAAAACATAATCTTGAAGTCATGGATCACTTTGTTCCTTGTGTTGATTCATCATTGCCACCAACTCCTCATCGAACATCAGATTCTTTTCCTTGTTTTCTAGGTGGTAGCCCAAAATTCAGTTCCAAATCACCAACACTTTCTCCCTCCAGTTCTGACTATGCCAGTTCCTTCACATTTTCACCCTCTTCAACAAATTGGTCTGATTTGTCACTCATGTCCTCTCGGCAGCCATCACCTTCTGGCCTGGAATCAACCGAACCCTTTTATTTTAAAGATGCATCTTTCTCAGAAAGAGAAAGATCCCCTTCACCTCACAAAGAAGCTGTCACCTCATCTTCAGAGGCATTTTTGGCTAATGACACATTGGTAGGGACAAACTCTTATTTTCCATGCAAAGGATCATACCCCTCCATTGCAGAGCGCAGAGGGAGTAACCCACCACCTCTCATGTTGCTACCCTCAATCAATGAATCATCCCACACTCACAAGATCACGGTAAGATCACAGTCATTCACTTTGCCTGACTTAGATGATGATTTGATGAAGGATGTTAGTTGTAAGAAATCTGATCGTGAACAAAGTGGAAAATGGCTAATATCAGATGCAGATATCATCATTACACCTGTTGAAAGTGAGATTAATGGCAGATGA	2142	0.443	MLGEEGNDRAAGHRRTYSRSVSWTDRSPATRKPPPAANNKPRPLLPPLQPLSINKRSVEEWPSAGSDDLGVWPLAQTPRGSITDSGRPGKEFQLKKDKLAFYDKECSRIAEHVYLGSDTVAKNHELLRQKGITHVLNCVGFVCPEYFKSDFVYKTLWLQDSPSEDITSILYDVFDYFEDVRQQGGRVLVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKNARGVTNPNMGFACQLLQCQKRVHAMPASPNSILRMYRMAPHSPYDPLHLVPKMVNQPCAKALDSRGAFIIHVPSAIYVWIGKICSSVMGCNARSAAIQVIRYEKATGPILSIHEGEEPLEFWVALSNQGEVKKDVVLPSEERMEIDDIDVSVDMGIGPRKVDEYDLDFGIFHKALAGGVVPPFSVSNTGSETCLPARENGWGRLRRKLACGIMKGFFTSSKCCDTTLSKDESSVNMEEENQHSVVVHPLPPSSNSLCVSSDSFEYLLDKNSNRAKHNLEVMDHFVPCVDSSLPPTPHRTSDSFPCFLGGSPKFSSKSPTLSPSSSDYASSFTFSPSSTNWSDLSLMSSRQPSPSGLESTEPFYFKDASFSERERSPSPHKEAVTSSSEAFLANDTLVGTNSYFPCKGSYPSIAERRGSNPPPLMLLPSINESSHTHKITVRSQSFTLPDLDDDLMKDVSCKKSDREQSGKWLISDADIIITPVESEINGR.	714

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g06248	713	Gene3D	Severin	257	356	IPR029006	-
	Seca11g06248	713	MobiDBLite	consensus disorder prediction	1	15	-	-
	Seca11g06248	713	SUPERFAMILY	Actin depolymerizing proteins	251	359	-	-
	Seca11g06248	713	Gene3D	Protein tyrosine phosphatase superfamily	88	247	IPR029021	-
	Seca11g06248	713	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	105	247	IPR020422	GO:0006470\|GO:0008138
	Seca11g06248	713	Pfam	Dual specificity phosphatase, catalytic domain	113	243	IPR000340	GO:0008138\|GO:0016311
	Seca11g06248	713	ProSitePatterns	Tyrosine specific protein phosphatases active site.	189	199	IPR016130	GO:0016311\|GO:0016791
	Seca11g06248	713	MobiDBLite	consensus disorder prediction	34	48	-	-
	Seca11g06248	713	MobiDBLite	consensus disorder prediction	1	51	-	-
	Seca11g06248	713	SMART	dsp_5	105	244	IPR020422	GO:0006470\|GO:0008138
	Seca11g06248	713	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	164	225	IPR000387	GO:0016311\|GO:0016791
	Seca11g06248	713	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	100	247	IPR029021	-
	Seca11g06248	713	CDD	DSP	106	240	-	-
	Seca11g06248	713	PANTHER	MKPA PROTEIN	10	660	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g06248	Seca-Chr11	162865125	162867293	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g06248	1	141	Protein tyrosine phosphatase (PTP) family	AT3G55270	38.947	2.06e-30	126

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g06248	-		-	tpra:123917031	891.723