Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06237 ATGAGAAACTTAGACCCCACGGCGGAGGAGTTCAGGCCCCGAAACCCTAACCATGGAGCCCCAACGACACCGTTTCCTCACCCTTACGCTTTTCCCTACTACGGAGCATTCGAAACGGCATCGTTTTACTATGGCGAAGGTGTCGTTCCTGTTCCGTATCCAAACACACAGTTGTCGTCTCCACCGGCGCTGGTTGCTCCCGCGACGGCTTCGCCGCCGCCGCTTTCCACGTCATCAACACGTTCACTGCTGCTGAGCGTCGTGCCTTCAGAAACGCTGATTTCCGAGTCCACGTTGAGGAGGGAATTGGAGGTGTTCGGGGATGTGAGAGCGATTCAGATGGAAAACTTACGAGAAGGAACCGTAACCGTTCACTTCTATGACCTGAGACATGCGGAAACGGCGTTAACTGCGATTCGATGGCAGCAGCACCACACAAGGCTTCGCAACCACCACTACACACCGTTCAACAGTACCACACGCATGCCAGCGCGTGGTCTCATTGCCGTGTGGGCCCAGTACATCCTCCCGGCGCGTGATGGTGTTCCTGAAGGGCAGAACCAAGGGACGATCGTGGTTTTCAATTTGGATTCGGAAATGGACGCAGAGAGTATCCGAGAAATCTTTGAGGCTTTTGGACCCGTAAAGGAAATCAGACATACCCCATCCAAAAAGAACCAAAGATTCGTGGAGTTCTTTGACATCAGAGACGCAGCAAAGGCTTTGAAGCAAATGAATGGCAAAGAAATTCATGGAAAACCAGTTGTTGTTGAATTCAGTAGACCAGGAGGTCATAGCAGGAAGTTTTTCAATGTGGCTGCTGCTTCCTCTACCATCTCCAAGTCATTGCCGCGAAGATTCTGGCCTAGTTTTGTTCCTGATGCTGCTTCACATTTTTCTCAATGCCAATTATCTTCTTCTAAGAAGGCTTTAACCATTTCCATGGACAATACGGTGGAAATTCGGAATGGGGATGAAGATCAGAGGCATCACGTGCCTCCTCCCAAGAGAAATTCCGTTAGAAAACACGTCAGCGAGTCCACGGTGGAAAGCGCGAAGCACCAACAACAACCAGCGCCTAGAAGTAGGAATTGGAGAGGAAAGCAAGCAAAGAAGCATGAAACTCGGTTTCTAATTAAAGAAGATGCTGCTACGGCCGAGTCTGGTTGCATAGATTCCAGAACTACTGTGATGATCAAGAACATACCCAACAAGTACAGCCAGAAGCTGCTATTGAACATGTTGGACAACCATTGCATTCACTGCAACGAGCAGATTGGCAATGGTGATGATAAGATTTTGTCATCCTATGATTTTGTCTACCTTCCCATTGATTTCAACAACAAGTGCAACGTGGGATATGGGTTTGTGAACATGACATCTCCGGAGGCAACTCTGAGGCTGTATAAGGCTTTCCATCTCCAACCATGGGAGGTGTTCAATTCAAGAAAAATTTGCGAGGTCACCTATGCTAGAGTCCAGGGATTGGAAGCGTTGAAAGAGCACTTCAAGAACTCGAAGTTCCCATACGAGATGGAGCAGTACCTGCCAGTGGTGTTTTCACCGCCTCGAGACGGGAAGCAACTGACGGAGCCACTTCCAATTGGTAACAACAAGTCCATCTATATGACTATCCCCATTGGTCTTGGGGCTTCTGACGACTTGCTTAGCAGTAGCAGTAACCGCCAAAACGGCACCGTTGAAGAAGGTGATGATGATCATGTGGATGGAGTGAGTGAGTGA 1743 0.49 MRNLDPTAEEFRPRNPNHGAPTTPFPHPYAFPYYGAFETASFYYGEGVVPVPYPNTQLSSPPALVAPATASPPPLSTSSTRSLLLSVVPSETLISESTLRRELEVFGDVRAIQMENLREGTVTVHFYDLRHAETALTAIRWQQHHTRLRNHHYTPFNSTTRMPARGLIAVWAQYILPARDGVPEGQNQGTIVVFNLDSEMDAESIREIFEAFGPVKEIRHTPSKKNQRFVEFFDIRDAAKALKQMNGKEIHGKPVVVEFSRPGGHSRKFFNVAAASSTISKSLPRRFWPSFVPDAASHFSQCQLSSSKKALTISMDNTVEIRNGDEDQRHHVPPPKRNSVRKHVSESTVESAKHQQQPAPRSRNWRGKQAKKHETRFLIKEDAATAESGCIDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIGNGDDKILSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFHLQPWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPYEMEQYLPVVFSPPRDGKQLTEPLPIGNNKSIYMTIPIGLGASDDLLSSSSNRQNGTVEEGDDDHVDGVSE. 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06237 580 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 255 IPR000504 GO:0003723
Seca11g06237 580 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 262 IPR000504 GO:0003723
Seca11g06237 580 MobiDBLite consensus disorder prediction 556 580 - -
Seca11g06237 580 MobiDBLite consensus disorder prediction 1 24 - -
Seca11g06237 580 Gene3D - 183 269 IPR012677 -
Seca11g06237 580 FunFam Terminal EAR1-like 1 340 500 - -
Seca11g06237 580 MobiDBLite consensus disorder prediction 321 372 - -
Seca11g06237 580 MobiDBLite consensus disorder prediction 566 580 - -
Seca11g06237 580 SMART rrm1_1 82 149 IPR000504 GO:0003723
Seca11g06237 580 SMART rrm1_1 190 258 IPR000504 GO:0003723
Seca11g06237 580 CDD RRM3_EAR1_like 394 495 IPR034458 -
Seca11g06237 580 MobiDBLite consensus disorder prediction 321 349 - -
Seca11g06237 580 Pfam RNA recognition motif 2 394 504 IPR007201 -
Seca11g06237 580 SUPERFAMILY RNA-binding domain, RBD 189 472 IPR035979 GO:0003676
Seca11g06237 580 Gene3D - 335 500 IPR012677 -
Seca11g06237 580 PANTHER RNA RECOGNITION MOTIF-CONTAINING 391 521 - -
Seca11g06237 580 FunFam Protein MEI2-like 1 188 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06237 Seca-Chr11 162757089 162760346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06237 191 261 Eukaryotic Initiation Factors Gene Family AT2G23350 34.667 2.95e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06237 - - lja:Lj4g3v2717080.1 625.55