Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06227 ATGTTAGAGAGTGGTTGTGGTGGTGGTGCACGTGATTCTGAGGCGAGTTTGGAGACTGTGAATTCAATCACACAGAGAAGTTCAATGAGCAGCGAAAGCATTTGCAGCACGAGTTTCAGCCGTCTTTCCTTCGACCTCCTCCCTGCTTCACCGGAGAGTCTCTCCGTGAAGCCTCACCGTTCCTCTGACTTCGCCTACTCCGCCATCCGCTCCGCCACCTTCCGCCGCAAATCCGCCCTCACCTTCCGTGACTTCCACCTCCTCCGCCGAATCGGCGCCGGCGACATCGGAACCGTCTACCTCTGCCGCCTCCGCAACAACGCCAACGACCAATTCGACAAGGAAGAAGAAGACGCGTCGTGCTTGTACGCCATGAAGGTGGTGGACAAAGACGCAGTGGCATTGAAGAAGAAAGCGCAGAGAGCCGAAATGGAGAGAAAGATCCTTAAGATGCTGGATCATCCATTCCTTCCTACACTCTACGCTGAGTTCGAGGCCTCTCATTTCTCTTGCATTGTCATGGAGTTTTGTTCCGGTGGAGACTTGCATTCGCTACGCCACAAGCTCCCGCACAACCGTTTTCCTCTCTCTTCCGCAAGATTTTATGCGGCTGAAGTACTGGTGGCGTTGGAGTACCTTCACATGCTGGGAATCATTTACAGGGATCTAAAGCCTGAGAACGTCTTGGTCAGATCAGACGGTCACATCATGCTTTCTGATTTCGATCTTTCTCTTTGCTCTGATGCAATCCCAGCCGTTGAATCTTCAGATTTCTTACACGATCCCGCGGTTCCATCTGCATTACCCTACACTCGCTCGCGTTCTTTTACCACTCCCTTCTCGTGCTTTTCCAACCGGTTGTTCCGGTCCCGCAAGGTCCAGACCCTTCTACCGAACCGGCTCTTCGTGGCTGAACCGGTTGCTGCCAGGTCATGTTCTTTTGTCGGAACACACGAGTACGTATCGCCGGAGGTCGCCTCCGGTCACTCGCACGGCAACGCCGTTGACTGGTGGTCCTTCGGGATATTCATCTACGAGCTAATCTACGGTCGTACGCCGTTTGCGGCCTCATCGAACGAGGCTACGCTGCGGAACATATTGAAGAAACCCCTGACCTTTCCCACGGAGACGCCGTCGAGCACGCTTGAGGTACACGCGCGGGACTTGATATCCGGCTTGCTGAACAAGGAGCCGTCGCAGCGGCTCGGGTCGAAGCGCGGCGCTGCTGACGTCAAGAAGCACCCGTTCTTCAAAGGGCTCAACTTGGCGCTGATTCGCATGCTGACGCCGCCCGAAGTGCCGGGCTCGAGAAGGCAGAAAACGACGTCGTTGCACCATGTGAAGGGTAGAAGCAAGCAGGAATCGACGGCGTCGTTTGATTGTTACTTTTGA 1392 0.5481 MLESGCGGGARDSEASLETVNSITQRSSMSSESICSTSFSRLSFDLLPASPESLSVKPHRSSDFAYSAIRSATFRRKSALTFRDFHLLRRIGAGDIGTVYLCRLRNNANDQFDKEEEDASCLYAMKVVDKDAVALKKKAQRAEMERKILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRHKLPHNRFPLSSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDAIPAVESSDFLHDPAVPSALPYTRSRSFTTPFSCFSNRLFRSRKVQTLLPNRLFVAEPVAARSCSFVGTHEYVSPEVASGHSHGNAVDWWSFGIFIYELIYGRTPFAASSNEATLRNILKKPLTFPTETPSSTLEVHARDLISGLLNKEPSQRLGSKRGAADVKKHPFFKGLNLALIRMLTPPEVPGSRRQKTTSLHHVKGRSKQESTASFDCYF. 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06227 463 PANTHER FLIPPASE KINASE 1-RELATED 25 439 - -
Seca11g06227 463 ProSiteProfiles Protein kinase domain profile. 85 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06227 463 FunFam protein kinase PINOID 177 245 - -
Seca11g06227 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Seca11g06227 463 Pfam Protein kinase domain 85 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06227 463 Pfam Protein kinase domain 312 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06227 463 FunFam protein kinase PINOID 2 83 176 - -
Seca11g06227 463 MobiDBLite consensus disorder prediction 432 463 - -
Seca11g06227 463 FunFam serine/threonine-protein kinase D6PK-like 309 435 - -
Seca11g06227 463 Gene3D Transferase(Phosphotransferase) domain 1 311 435 - -
Seca11g06227 463 Coils Coil 125 152 - -
Seca11g06227 463 MobiDBLite consensus disorder prediction 1 24 - -
Seca11g06227 463 SMART serkin_6 85 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06227 463 CDD STKc_phototropin_like 83 434 - -
Seca11g06227 463 SUPERFAMILY Protein kinase-like (PK-like) 66 436 IPR011009 -
Seca11g06227 463 Gene3D Transferase(Phosphotransferase) domain 1 177 244 - -
Seca11g06227 463 Gene3D Phosphorylase Kinase; domain 1 83 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06227 Seca-Chr11 162688697 162690345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06227 12 462 AGC Kinase Gene Family AT2G34650 66.593 0.0 586
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca11g06227 Pkinase 7.9e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06227 - - vun:114177159 736.102